Scaffold Ga0307514

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10000393 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99330
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (64.52%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

99330

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

60 (64.52%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6253

Long. (^o)

-120.532

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F016905	Metagenome / Metatranscriptome	243	Y
F047400	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100003931	F047400	AGGAG	MAQCSAGKHDQWRGYMPVLVVNRGIIKSISILTAIIRPMIKFDVDKPRDCFRQEVKWTLAIR
Ga0307514_100003932	F006048	AGGAG	MLKQRPTLDITRLNRYQVRTQVDKVNSHFIQSARENIAALYDLPRFESAAERLEFIDSLLADNNSFFPVAECVEGGVRGPNPTQRESKAPNEWPVST
Ga0307514_100003933	F010438	GGAG	MWNRRPFMSASDLQSVKYATRRVLKALAEAPHWQIIETYWNTAMQQNNIWSIAFEVRTKEILKEVC
Ga0307514_100003934	F004891	GGAG	MIAWASGFGMGVGRFSRPLREVGVIAMPNTGLDTTRRVEVPPGAGVLRLLVTSVAVGVCIDRRCLEHRVEITH
Ga0307514_1000039353	F016905	GAG	MPGHHYTPAEYALQQIVESFGRLLFELEEHRLTHIYAVVLLFCQLEGIEYLVLRYLNTGALLFEEFSEEWLFYGEV
Ga0307514_1000039375	F004891	GGAG	MITRASGLGMGVGMSSRPLRAVGMIAILDVGLDTPGPVAVAPGAGVLRLLVPGMAVGVFIGRLCVADGVEVTR
Ga0307514_1000039376	F006048	N/A	MPFYSSTRDNIAELYDLQYFISATERLEFIDSLLADNEYLVPVAERVEGGVHDLNPTQREWKAANEWPASTLLSGGTNPTVYLHQILSLGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307514_10000393

Overview

Ecosystem & Geography

Associated Families

Sequences