Scaffold Ga0307514_10000345

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000345
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109673
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (65.03%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F042672	Metagenome	157	Y
F046750	Metagenome	150	Y
F060560	Metagenome	132	Y
F086388	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000345112	F046750	GAG	VVDTVQIQCRECQKLLTNGQHSLYFLAKAIPQFIYIKFYHWVNNHGKYADGFYNSMIDNKDGHVPSPLIMFTCATLRHALLEWQKNNGVHPKASKSKLKADRPDCPNYLKYKNDNGDNISCCTATGHKLLTSPGVADTYTFLMNTWNTLLESYQQRVYNNTLATVKCQIQQVENQTPAMVISVEAAHVDNAILLEYLTSKVALEEPEIGSTDPNIPIDNNCTDDELHFEMPGGSGDYEDESDESNMRNALPTASRRRQPGSELERFDLGTSHSDGYEGEDGNDADADEEGEVSQAND
Ga0307514_10000345119	F042672	N/A	VVVIPTKYNDPHGWAASVGGFILVVKQTDKMHIVPFGAIVGPAHLVQENNAASDRINSIWLVNNHVDLDTYWTVY
Ga0307514_10000345126	F086388	N/A	METGDKTAERIEMAAVKQGNRTIVADNIEWCVPQIDCLCKWHVMNFCPVILNCHCCVVASQIGHQVEPYSLCLVEILSSTCSVEQR
Ga0307514_10000345133	F060560	GGA	MINDKDGHIPSPLIMFTCTALHHALLEWQKNKGVHPKASKSKLKANRPDRSNYFNHNNDGSKITSCCAVTGRKLLTSPGVADTYTFLMNTWNTLPESYQQRVYNNTLATVKRQIQQAENPTPAVEISVKAARVDNAIILDYLASEVALEEPEIASTDPNIPIDNNCTDDELHFGMPRGSGDY
Ga0307514_10000345134	F006048	AGGAG	MLNQRPTVDITRSNRYQVRAQVDKVKSHFIQSVRDNIAELYDLHRFESAAERLEFIDSLLADNKYIFPVAERVEGGVRGPNPTQRESKAYNEWLASTLLPGGGNPAVYLHQILSSGE
Ga0307514_10000345135	F010438	GGAG	MWNRRPFMSASDLETVSYATRRVAKTLAEAPHWQIIETYWNTAMQQNNIWSIAFEARTKEILKEVC
Ga0307514_10000345136	F004891	GGA	MIARGSGFGMGVGRFSRSLRGVGVLAMPDAGLDTTRRVESVCMVPLGAGVLRLLVPGVVVGVIIDRRCVVDGVEATR
Ga0307514_100003452	F042672	GAGG	MTQQWVLHPQAQQYAVVIPTKFKDHSGWADCIDGFIRLVKQTNKMHIVSIGAIVRPAHLVQGNAASGGIDSVWLVNNHVDLDTYWTVY
Ga0307514_100003453	F004891	GGA	MIAWASGLGMGVGRFSRSLRGVGVLAKPDAGLDTTRPVESVCKVPPSAGVLQLLVAVGVYIDRCSVADGVEATCLVISATQELLSEDEGVEF