Scaffold Ga0307514_10000332

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000332
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112647
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (69.01%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F036505	Metagenome	169	Y
F038958	Metagenome	164	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000332123	F038958	GAG	MTEVMANLFVDVHPSKAKLTLFLDSNCILIASTVSAYSLWQILLRVVADGSTRSSHNALYGRRSSRFDVAFRGI
Ga0307514_10000332124	F004778	N/A	VLDRFELTNGRLFGITTDNASSNYWMTCKLQSILEASGIEWPALRNHITCMAHVIQLALGAFMSNLGDKGHTKSWEAHARDQQFGENQTIDIGKSQRLRKEGNARINTVSAMKPGLAMIIEKVHIS
Ga0307514_1000033219	F004778	AGG	LKDVLDCLELTDGHLLGITTDNASSNYSMTRELQSTLEASGIEWPALRNHRQCMAQVIQLALGSFMSSFGVKGRTKSWEAHDRDQQFVHNKSMAIGKSHRLQKEGNARIHKVSAIKPGLAKIIEKVRIS
Ga0307514_1000033226	F060560	GGA	MIDHKDGHIHSPLIMFTCSALRHALLEWQKNQGVHPKASKSKLKANRHDRSNYFNCKNDGGNIASCCAVRCPKLVTSPSVADTYTFLMNTWNTLPESYQQRVYNNTLATVKRQIRQAENPTPAVVISVETAHVENAILLDYLSSEVVLEEPEIGSTDPNIPIDNNCMDDEMHFGMPGGSGNFVDKGEASDAIPSASRRRRATT
Ga0307514_1000033227	F081959	GGA	MSTGLRVRMAMIRMRRKKHRKPMMDQLSMWTTEGIVLESVKIGKYITDM
Ga0307514_100003325	F063295	GGA	VWVKQCPGRCYGALNGRLPWQLQRLFKIKLQNKDGALVEYWLAVALTTIPETSGNLDPVLKFVQVRKAPAAVALQVFSVGNIVGYAHIIPEMLTSTYTGDARNERWIVNSHIDQATWNDVYN
Ga0307514_1000033261	F036505	N/A	MAHLIQLSLGAFMSSLGVKGRTKSWEADERDQQLGENEITDIGKSQRLRKEGNARINKVSAMRPSLAKIIEKVRISTYFESAETDLHIAENASCIDYADTWTSELVY
Ga0307514_1000033279	F004891	GGA	MIAQASGLGMRIAMFSKQLCGVGVLSMSDVGLDTTRHVESVCVIPLGAGVLRLLVTTVPVGVIIDCHCAADAVEITL
Ga0307514_1000033286	F051592	N/A	VENPLLQVVKHADLHCMEEVGLREVAHNTGNMSKHIECSVNIVRRQFSIRCPGVGITEHS
Ga0307514_1000033295	F092994	GAG	MIAGYTRTAPIDLSVCKRRISAEDRAKRFADGRYLYRGGFNHRAAECAARKKAQTFKASGAEVKEVGTKEGSE