Scaffold Ga0307514_10000322

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000322
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115009
• Total Scaffold Genes: 145
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (64.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F026456	Metagenome	197	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y
F062316	Metagenome	130	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000322119	F060560	N/A	MIDDKDRYIPLLLIMFNCTTLPYAHQEWETNNGVRPKGSKSKLKPDTPDGSNYFNYKKDDGKNTSCYTATGRKWLTSPGNADKYVCVKNTWNTLPESNLQRVYKNTLPTVKREIQLAENRTPAVVISMEVVSVDNAIHLDYLTSEVALEESEIENTDANIQRDNNCMEDELHFRMLGGSRDYEDEADESH
Ga0307514_10000322120	F006048	GAG	MHKGDLETGMLKQWPTLDVTCSNRYQFRAHRDEVKSHVIQPAWDNIVELSDLHHFESDAEYLEFIDSILAHSKYLFPVTEHVEGGVSGPNPMPTESKAANQVLASTLPPGGNNPTGYLHQIISSGE
Ga0307514_10000322134	F051592	GAG	VYLPEVENPLLEVAQHTDLHCMEEVWLREVAHNTGYMLIQVESLVDIVQREFGIGCLGVGIAEHPI
Ga0307514_1000032288	F026456	GGA	VLATKKTQWKEDLDFTLKVAQQKLSKYYSEVTPMPGVLHISAHILDPFWKFQSLKKWDKAMDINPEEKTSYTTQYQEAFLKYVENKYCAKH
Ga0307514_1000032292	F062316	N/A	MNWFDVAGIFCLVFETEPLNDFESTEAILNESFEEEPLEAYFWEQSIIPSPWNTYWTDAARDGGGLDINDSVFGPHWIQYTEAHSWFPCDPEEQCDCEGHNCARTHSTVRHAATAATTAKCLGIPLIVVVPPTPTPSEIDAYNWHW
Ga0307514_1000032294	F092994	N/A	MTPAGTVAAYTGPAPMDLSAGKRRISAEERAKRFTDGRCLYDGGFKHRAAECAARKKDQMFKVAGAEIKEVGTREGSEESGQD