NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000318

Scaffold Ga0307514_10000318


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000318 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115479
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)99 (68.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F036505Metagenome169Y
F062316Metagenome130Y
F081952Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_1000031811F008227N/AMDTPPPPQGESGSNASRLAGATTNTDILGTQQERRHKLVHRDAADAATKHMTQDAHLKIVRKTGSRRNKKQHAVGCEYIHIDAIGGQLTV
Ga0307514_1000031818F004778N/AVLYCFGLTDSRLLGITTDNASSNYSMTRKLQSTLEDSGIEWPALRNHIQCMARVIQLPLGAFMSSLGVKGRTKSWEAHEHDQQFGENESIDIGKSQRLRKEGNAIINEVSAMRPGLAKIFEKVSIS
Ga0307514_1000031829F081952AGGMVNAPKMTFWPLLAGKYGKSTKKATRRRHQANEGKSGLEAEWVRALGAVCSFRYKKKLATEKRQETHFLSNEEKEK
Ga0307514_1000031832F036505AGCAGGMEDLDRFKLPYGRLLGIITNNASSNYSMTRELQTTLEASGIEWPALRDHILCMAHVIQLALGAFMISLGVKGRTKSWEAHECDQQFGQNESTDIGKSQRLRKEGNARINKVTAMRPGLAKIIEKVHISTYFDSPEADLHIAENACCIDYADTWSSK
Ga0307514_1000031850F062316N/ALNAFESIEAILTASFEEEPLEAYFWEQSAVPSPWNTYWTDAAKEGGGLDINDPVFGPHWTRYTGAHSRFPCDPEEPCDCEGHNCAGTHLTIGHAAAAATTAKSLGIPLIVVVPPTPTPSEIDAYNWHW
Ga0307514_1000031862F062316N/AVSTSYDDLPDLISVSTPTDHHIRMPQYGSNCTSRTNWIDLAGTPCLVFEPEPLNAFESIETILAASLGEEPLEAYFWEQSAFSSPWNTYWTDAAREGGGLDINDLVLEPHWTRYTGAHSWLLCDPEETCDCEGHNCVGIQSTIGHAAAAATTAKCLKIPLIVVVPPTPTPSELEAYNWHW

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