Scaffold Ga0307514_10000315

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000315
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115788
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (72.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F016905	Metagenome / Metatranscriptome	243	Y
F019765	Metagenome	227	Y
F047400	Metagenome	149	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100003151	F019765	AGG	MLQVMDNMEAHCIFYIKVGMFTYPEQSKISNLTINKSGIVKLTVQHDLIVSISFM
Ga0307514_10000315118	F016905	GAG	MPGHQYTPAEYALQKIVESFGNLLSELAEHHLTHTYAVVFHFCEIENIDYLVLRNLNTGTLPFEEFCEEWLFEGEV
Ga0307514_1000031527	F089625	GAG	MPLGFATGPSLNHVERQPMKSKQDDNNSGMQFMLNGQYIEMRVNGVSTICGLVSTVFHQ
Ga0307514_1000031530	F004778	N/A	VFDRFELTDGHLLGITTDNASSNYSMTCELQSTLEASGIERLALRNHIPCMAHVIQLALGAFMSSLGVKGRTKSWEAHERDQQFGENESIDIAKSQRLRKEGNARINKVSAMRSGLAKIIEKVHIS
Ga0307514_1000031590	F047400	GGA	MNTFVLLPLPESMAQRCAGKHDQWQGYMTVLVVIRGIIKSICILTAVIRPMIKWDVDKPRDCFRQEVKWTLAIH