NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000312

Scaffold Ga0307514_10000312


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000312 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116923
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (65.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010438Metagenome303Y
F046111Metagenome / Metatranscriptome151Y
F059517Metagenome133Y
F062316Metagenome130Y
F063295Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000312100F010438GGAGMWNRRPFMSASDLEMVSYATRCGGKELAEAPHWQIIETYWNTAMQQNNIWSIAFKGRKKEILSEVC
Ga0307514_10000312101F059517GAGMLNQRPTVDNACPNRYQVRAQVDRVKSHFIQTATDNIAELNDFHCFESATARLEFIDSLLADNKYLFPVAECMEGHVRGPNTTQ
Ga0307514_10000312106F062316N/AMHSYDSNCTLRTNWFDLAGIPCLVFEPKPLNAFESIEAILTAFFEEEPLEAYFWEQSAVPSPWNTYWTDAAKEGGGLDINDPVFGPHWTRYTGAHSWFPCDHEEPCDCEGHNCARTDSTIGYAAAAATTAKSLEIPLSVVVPPTPTPSELDAYNWHW
Ga0307514_1000031231F046111N/AVKYDLFMDVSSLEHIVIRAKLGDIIGFQIIQIAAQKGSFQLTIIALAIEIVPTYRDLERYTSGLGTCTVGIL
Ga0307514_1000031289F063295N/AMQRLGRCYGTLNGRLPWQLQPLFKIKLPNKDGAFVEYWCTLVFTTIPENLGNFDPISKFVQVRKALAAIALQVFSVANIVGCVHVIPEIATGSMTGDGRNKRWIVNSHMDLATWNDAYNE
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