Scaffold Ga0307514

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10000293 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	125928
Total Scaffold Genes	150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	105 (70.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

125928

Total Scaffold Genes

150 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

105 (70.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6253

Long. (^o)

-120.532

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F042672	Metagenome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000293121	F042672	N/A	VVITTKYKDLHGWADCVDGFIRVVKETNNMHIVPVGALVGPVHLVRENAELGSMDSIWLVNNHVDLDTYWTVY
Ga0307514_1000029331	F008227	N/A	MGATPNTELLRTQQECRHKLVHRDAANVATKHMTQYAHLKIVCKTGSSKNKKQHAGGCEYILIETNGGQLAG
Ga0307514_1000029332	F019765	GAG	MLQVMDNMEVSCIFYVKVSTFTHLELSKIALVTVNTSGIMTLTVQHNMIISVSFV
Ga0307514_1000029338	F004778	N/A	MLDRFELTDGRLLGITTDNGSSNYLMTRKMQSTLEATGIEWPELRNHIPCMAHIIQLTLGAFMSSPGVKGHAQSWKAHERDQQFGENERIDIAKSQRLRKEGNARINKVSAMRPGSAKILQKVCIS
Ga0307514_1000029378	F004778	GGA	MLALHLKDVLDRFELTDGRLLVITTDNASSNYSMTCELQSTLEASGIEWPALRNHIPCMGYVIQLALGVFRSSVGVKGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVSAMKPGLAKIIEKVHIS
Ga0307514_1000029383	F019765	AGG	MLQDMDNIVASCVFYVKVSTFTHLAQNKTTLLTVNQSGMVRLIIRHDLIVSVSFMYYPGDCL
Ga0307514_1000029395	F004778	N/A	VLDCFELTDGCFLGITTDNASSNYLMSGELQSTLEASGFEWTALRNHIPCMANFIQMALGAVMSSFGVKSCTKLCEVHQRDQQCGENDSIDIGKSQRLRNEANATITQLLAMQPGLLKIIEKVCISFYLKVLKLTFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307514_10000293

Overview

Ecosystem & Geography

Associated Families

Sequences