Scaffold Ga0307514_10000289

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000289
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127593
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (58.74%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F047400	Metagenome	149	Y
F051592	Metagenome	143	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000028910	F006048	N/A	LDSSRSNRYPVCVQVDKVKSHFIQSARDNIAELYDLHRFEFAAEDLEFIDALLADRKYLFPIAERVEGAVHGPNPTQRESKADTKWLASTSLPGGSNIAVDVHHMLSSGE
Ga0307514_1000028911	F010438	N/A	MTPLVFVPGRLLELYIWNRRPFMSASDLEMVSYATRRVGKALAEVPHWQIIETYRNTTMQQNNICFIAFEALTKEIMIEIC
Ga0307514_1000028912	F004891	GGA	VIVRASGLGMGVGKFSRPLREVGVLGMLYAGLDTPRRIESVCKIPPGVGVLRLLVPGVAIGVLIDCRSITHWVEVTC
Ga0307514_1000028942	F008531	GGA	MTCELQSTLEATGIKWPQLWKHISCIAYVIQLALSAFISSLGVKGHTKSWDAHERDSQFGENDSIDIGKSQRLQNEGNATINNVWAL
Ga0307514_1000028972	F063295	N/A	MQHLGKWYGMLHGCLLWQLPREFKINCQNEDGSFVEYLLALAFTTIPENSCNLVPGWKFVQVRNVPAVVDLEGFSMGNIVGCTHVVLERATSWKTGDGRNEQRIVNSHIDLMTWNDDYN
Ga0307514_1000028976	F051592	N/A	VEIPLLEVVNHADFHGVTEVRIREVAYCTGNMSKHVESSVNMVRREFGISYLDVAIFER
Ga0307514_1000028992	F047400	AGGAG	MAQGGAGKHDQWRGYMTVLVITHVIINSSSILTVVICPMIEFDAEKLQDCFRQEVNGMLAIR
Ga0307514_1000028994	F081959	AGGA	MMTSIRASMVKMQMRMRKNRHRKPMMDQRRIWRTEGILLESMKIGLYISDL