Scaffold Ga0307514

Basic Information
Taxon OID	3300031649 Open in IMG/M
Scaffold ID	Ga0307514_10000278 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	131550
Total Scaffold Genes	149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	97 (65.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

131550

Total Scaffold Genes

149 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

97 (65.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6253	Long. (^o)	-120.532	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

46.6253

Long. (^o)

-120.532

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016905	Metagenome / Metatranscriptome	243	Y
F036505	Metagenome	169	Y
F042672	Metagenome	157	Y
F059517	Metagenome	133	Y
F079403	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000278100	F079403	N/A	MITDFRALLDNTQDATHHVPIYSGTREFIKHKSRNTTYISDEQLHPIELCIYHGIKVQVDGLDDELISQMFRCTGSQSWRGGDRRNDWVLVKQHPGRCYGALNGRLPWQLQRLFKFKLQNEDGAFVEYWLALAVTTIPENSGNLDPVSKFVQVRKVPAAFSLQVFSVGNIVGYVHVIPEIATSSKTGDGRNEGRIFNSPIDLVTWSDVYI
Ga0307514_10000278113	F036505	GGGGG	MSSLGVKGHTKSWEAHECDQQFGENESTDNGKSQRLPKEGNARINKVSAMTPGLAKIIGKVHISTHYESAETDLHIAENACCIDYTDTWTSKRVH
Ga0307514_1000027820	F016905	GGA	MPGHHYTPAEYALQQKVESFAKLLSELEEHRLTHIYAVALLFCQYENIDYLVLRYLNTSALPFEEYSEEWLFDGEV
Ga0307514_100002786	F042672	AGGA	VVILTKYKNPHGWANCVDGFIRVVKEINMMHIEPVGAIVARAKLVPENTASDSIDCVRLVTYYGDFDTYVTVYSVPMPQSSCAGGRELVN
Ga0307514_1000027890	F059517	GAGG	MAHVRYYTLKQYQVRAQVDKVKSHSIQSARENIAELYNLHRFESAAERLEFIDSLLVDNKYLFPIAERVEGGVHGPNQTLRVESC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307514_10000278

Overview

Ecosystem & Geography

Associated Families

Sequences