Scaffold Ga0307514_10000273

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000273
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132954
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (61.03%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F019765	Metagenome	227	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y
F046111	Metagenome / Metatranscriptome	151	Y
F047400	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000273108	F026456	GGA	MLKRHTVTLHHVITVYNVMFDHMDRVMEALANKKTLRKEDLFFTVKLALQKLFKYYSELSPTPGMLLIVAHILDPFQKLRSFRKWDKGIDINPVDEISYPTQS
Ga0307514_10000273109	F008531	AGGA	VHGARHTAGLGPFMSSLSVKGCTKSWEAHERDQQFGENASIAIGKRQRFRKESNARINKVSAMRSGLAKIIEKVCIS
Ga0307514_10000273129	F046111	N/A	MDVSFLQHGVIRAKLGDIIGFRIIQIDAPNASFQLTIIALALELVSTYRDLERYPSGLGYCIVYRL
Ga0307514_1000027367	F047400	AGGA	MNTLVLLPLQESMAQRGVGKHDQWRGYMTILVVDRGIIKFISLLTTVIRPIIKFEVDILWNCFRQKAKSTLAIS
Ga0307514_1000027369	F010438	N/A	MVSPSHSIHRFGHSDMMHLAFAKDRILELFMLNRGPLINASDLETVSYAKRPVLKVVAEAPHRQIIETHWNTALQQYTIWSIAFEACAKEILKEICRSDNKHCILHA
Ga0307514_1000027370	F004891	N/A	MAVDRFSRPLSGVGVIIMPDAGLDALGHLEVPPSAGVLRLLRPCVVVGVFIDRLGVVGGVEVTP
Ga0307514_1000027381	F019765	GGAG	MMQVMDNMEVSCVFYVKVSTFTHLDQSKIARLTVNISGIVTLTVQHEMIISISFM
Ga0307514_1000027386	F008531	N/A	MTHKMHSTLEASGIEWPALRNHILCMAHFIQLALGVFVSSLGVKGGTKSWEAHERNQQFGENESIDIGKSQRLRKERNARIHKVSAMRPGLAKIIEKVRIS
Ga0307514_1000027396	F038958	N/A	MTHVIPNLFVDVHRSKAKPTLFLGSNYFLIASTVSVNSLQQILLMVLAHDNTNSLRNALYDRHSSRFDIALHGICGQMQPDLR