NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000251

Scaffold Ga0307514_10000251


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000251 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139110
Total Scaffold Genes165 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)99 (60.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F016905Metagenome / Metatranscriptome243Y
F019765Metagenome227Y
F059517Metagenome133Y
F079403Metagenome115Y
F080709Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000251126F059517AGGAGMLKQRPTLDITHSNQYQVHAQVDKVKSLLIQSARDNIAELYDLHRFESATERLEFIDSFLADNKHHFPVAESMEGGVRGPNPMQR
Ga0307514_10000251127F010438GGAMRLVFEIGRLLELYKLIRPPFMRASNLETVSYATQRILKALAEAPHWQIIVMYWNTALQQNNIWSIAFEVRTKEILKEVC
Ga0307514_10000251128F004891GGAGMIARASGFVMGPGRFSRPLGGVRVITMPDAGLDTTRRVEVPLGAGVLRLLIPGVAVEVFIDCR
Ga0307514_10000251137F080709N/AMVELSTRKREIRGDRGNHHEKLGLERSSCASQLTIPDTAGTSADPAGNITDTGSSKPIQASRTPDFS
Ga0307514_10000251158F016905N/AMPGHRYTPAGYTLQRVVESFGNLLYELAEHHLTHTYAVAFHFCQLENIDYLVLRYLNTGALPFKEFSEKSLFEGEP
Ga0307514_1000025138F019765GAGMLQDMDNMEASCVIYVKVGTFTHLEQSKISLLTVNQLEIVRLTVQHDLIVSVSFM
Ga0307514_1000025148F079403GGAMIKDFRALLDNTPDSTHRVAIFSGRWEFIKHKSRNKAYVSDEQLHAMELCIYHGIKIQDEGLDGERISQISRCTGSHSLRGGDQLNDWVRVKQCLERYYGALNGRLPWQLQQLFKIKLLNEDGAFVEYWLALALTTIAVNSGNLDPISKFVQVRKAPAAVALQVFSVGNIIRCMHVIPEIATGSKTRDRRNKRWIVNTHIDLATWNDVYN
Ga0307514_1000025158F010438GGAGMWNRRPFMSSSHLETVTYATRRVAKALAEAPHWQIIERYWNTAMQQNNIWFIAFEARTKEILKKVC
Ga0307514_1000025159F006048GAGVDKVKSHFIQSARDNIADLYNLHRFESDAKRLKFIDSLLADNKYLVPVAGCVEGGVCGPNPMQRELKTAKEWPTSTLLSGESNSAFYLHQLLSSGE

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