Scaffold Ga0307514_10000251

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000251
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 139110
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (60.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F016905	Metagenome / Metatranscriptome	243	Y
F019765	Metagenome	227	Y
F059517	Metagenome	133	Y
F079403	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000251126	F059517	AGGAG	MLKQRPTLDITHSNQYQVHAQVDKVKSLLIQSARDNIAELYDLHRFESATERLEFIDSFLADNKHHFPVAESMEGGVRGPNPMQR
Ga0307514_10000251127	F010438	GGA	MRLVFEIGRLLELYKLIRPPFMRASNLETVSYATQRILKALAEAPHWQIIVMYWNTALQQNNIWSIAFEVRTKEILKEVC
Ga0307514_10000251128	F004891	GGAG	MIARASGFVMGPGRFSRPLGGVRVITMPDAGLDTTRRVEVPLGAGVLRLLIPGVAVEVFIDCR
Ga0307514_10000251137	F080709	N/A	MVELSTRKREIRGDRGNHHEKLGLERSSCASQLTIPDTAGTSADPAGNITDTGSSKPIQASRTPDFS
Ga0307514_10000251158	F016905	N/A	MPGHRYTPAGYTLQRVVESFGNLLYELAEHHLTHTYAVAFHFCQLENIDYLVLRYLNTGALPFKEFSEKSLFEGEP
Ga0307514_1000025138	F019765	GAG	MLQDMDNMEASCVIYVKVGTFTHLEQSKISLLTVNQLEIVRLTVQHDLIVSVSFM
Ga0307514_1000025148	F079403	GGA	MIKDFRALLDNTPDSTHRVAIFSGRWEFIKHKSRNKAYVSDEQLHAMELCIYHGIKIQDEGLDGERISQISRCTGSHSLRGGDQLNDWVRVKQCLERYYGALNGRLPWQLQQLFKIKLLNEDGAFVEYWLALALTTIAVNSGNLDPISKFVQVRKAPAAVALQVFSVGNIIRCMHVIPEIATGSKTRDRRNKRWIVNTHIDLATWNDVYN
Ga0307514_1000025158	F010438	GGAG	MWNRRPFMSSSHLETVTYATRRVAKALAEAPHWQIIERYWNTAMQQNNIWFIAFEARTKEILKKVC
Ga0307514_1000025159	F006048	GAG	VDKVKSHFIQSARDNIADLYNLHRFESDAKRLKFIDSLLADNKYLVPVAGCVEGGVCGPNPMQRELKTAKEWPTSTLLSGESNSAFYLHQLLSSGE