Scaffold Ga0307514_10000248

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000248
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 139747
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 102 (63.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F060560	Metagenome	132	Y
F079403	Metagenome	115	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000248103	F046750	N/A	MINDKDCHIPSPLIMFTCNVLRHALLEWQRNKGVHPKASKPKLKVDRPDHSNYFNDKNDGGKNASCCAAMRPKLLTLPGVANTYTFLMNTWNTLPESYQQRVYNNTLATVKHQIQQAENPTPAMVISTEAASVDNAMLLDYLTSEVALVEPAIRSTDPNFLIDNNCTDGELHFGIPAGSGDFEDQGDVSDERDAITTASWRRRPATELQRFDF
Ga0307514_10000248104	F004891	GGAG	MIAQASGLGMGVGRVSRPLGGVGVIAMPNADLDTMRGAEVPPGAGVLRLLVNGVAVVVFLTDAV
Ga0307514_10000248114	F079403	N/A	MHTDAMIKDFRALLDNMQDTTHRAAIYSGMWEFIKHNSRNKTYILDEQLHAMEVCIYHGINVPVEGLVGERISQMCRCAGSQSRCGGDRRNDWVWVKQYPGRCYGVMNGRLPWQLQRLFKIKLQNEDGAFVEYWLALAFTTIPENSGNLDPVSKFVDVRKALAAVALQVFSMGNIIGCAHVIPEIAANSKTGDGCNERSIVNSHIDLVTWNDGYN
Ga0307514_10000248133	F004778	GGA	VGAWLTGHLKAVLDCLELTDRRFLGITRDNASPNYSMTPELTTTLEASRIEWPTLRNHIPCIMHVIELALGAFMSSLGVKGRTKSWEAHERDQQFGENESTDIRKSQRLRKEGNARINKVLAMRPGLAKIIEKVRISTYSESAETDFHIAENAC
Ga0307514_1000024874	F081959	AGGA	MLTGMSARMATMRIQMRKNKHRKPMMDQRRMWRTQGTVLDRVIIGHYISDM
Ga0307514_1000024893	F010438	GGAG	MWNRRPFMSASDLETVSYTTRRVSIALAEAPHWQIIEMYWNTVMQQNNIESIAFEVGTKAILKEVC
Ga0307514_1000024895	F060560	GGAG	MNKGVHPKASKPKLKADRPDCLNYFNCKNDGGKNASCCATTGRKLLTSPGVADTYTFLMIIWKTLPESYQQRVYNKTLATVKHQIQPAENPTHAVVISVQAARVDNAILLDYLISEVALEKPKIRRTDLDILMDNNYPDHELHFGIPGGSWDYQDAGEESDERVHIATANLSRHPAT