Scaffold Ga0307514_10000245

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000245
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140967
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (57.41%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F036505	Metagenome	169	Y
F038958	Metagenome	164	Y
F048690	Metagenome	147	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000024512	F036505	N/A	MTRELQTTLEASGIEWLALRNHIPCMAHVIQLALGAFMSSLGVKGCTKSWEAHECDQQFGENESTDIGKSQRLRKEGNARIHKVSAMRPGLAKIIEKVRISIYYESAETDLPIAENACCIDYADTWTSKRVH
Ga0307514_10000245129	F081959	GGA	MSTGMRARMATMWMRRKKHRKPTINQRRMWRTEGIVLESVKIKQYISDL
Ga0307514_10000245131	F006048	AGGAG	MLNQRPTLDITCSNRYQVQAQVDKVKTHFFQSAMENIAELYDLHRFESVTERFEFIDSLLADNKYLFPTAEHVEGGVHGPNPTQRESKAANEWLASTLLSGRINPEVYLHQLFSLGE
Ga0307514_10000245133	F004891	GGA	MIVRASGLGMGVGSFSRPLRGVGVLAMPDAGLDTTRRVESVCKVPPGAGVLRLLVPGMLVGVFIDRHSVADRVEVTR
Ga0307514_10000245143	F063295	GGA	VWVKQRPGRCYGTLNGRLLWQLEGVFKIKLRNEARAFVEYWLALALTTIPENLGNLDPVSKFVQVRKAPAAVALEVFSVGNIVGRAHVIPEIATSSKTGDRWNERWIVNSHLDLATWNDMYN
Ga0307514_1000024535	F008531	GGA	MAHVIQLALGAFINSLSVKGHAKSWKAHECDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLAKIIVKVRIS
Ga0307514_1000024536	F038958	N/A	MASLIVDVHPSKAKLTLFRNGNCFLIASMVSAYSLRQMLMRVVVDGSTRSSRNALYDRRCSRFDIAFHGIYAETIPNMR
Ga0307514_1000024539	F048690	GAG	MLQVVDNMEASRIFYIKVGTFTHLEQSKTSLLTVNKTGIVRLTLQHDFIVSVSFIFYPGDNLRQTSADVLSFEQSPMHS