Scaffold Ga0307514_10000233

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000233
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144214
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (37.20%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F016905	Metagenome / Metatranscriptome	243	Y
F046750	Metagenome	150	Y
F047400	Metagenome	149	Y
F059517	Metagenome	133	Y
F063295	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000233104	F006048	N/A	MLNQRPMVDITRSNQYQICAQVDKVKFHFIQSARDNSAEHYDLHCFESTTEDLEFIDSLLADNKYLFPVAERVEGGVRGPYPTQRESKADNKWLASTLLPGGSNPAGYLHQILSSGK
Ga0307514_10000233105	F046750	GGA	MISGKDGHILSPLIMFTCTTWCHALLECQKNKGVHPKASKSKLKADRSDRLNYVNHKNDSGKIASCCAVTGRKMSTSPGFADMYTFLMNTWNTLPESYQQRVYNNTLATVKRQIQQAENPTPAVVISVEVARVHNAILFDYLASEVELEEPEIESTDPNIPIDNNCTNDEFHFEIPGGSADYEDEGDESDDRDAIPTASRRQWPTTELEKVXAGNQRCRQVXGQGWRRCGYGXGXRSIASRXWINAEYGGLRA
Ga0307514_10000233134	F010438	N/A	MRLVFATGRLLELYMWNRRPFMSANDLETVRYAMRCVSKALAEAPHWQMIETYWNTAMLQNNIWSIAFEARTKEILNEVF
Ga0307514_10000233135	F059517	N/A	LDITRSNQYQVRAQVDKVKSHFIQSARENIAELYDLHRFESAAERLEFIDSLLADNKYLFPVAERVEGGVHGPNQTQRESKAANE
Ga0307514_10000233145	F016905	GAG	MPGHQYTPAEYALQKIVESFGNLLSELAEHHLTHTYAVVFRFCELENIHYLVLRYLNMGALPLEEFSEEWLFEGEV
Ga0307514_10000233163	F046750	GGA	MIDDKDGYIPSPLIMFTCSALRHALLEWQKNKGVHPKASKSKLKVDRPDRSNYFNCKNDGGKIVSCYTVTGRKLLTSPGVVDMYTFLMNTWNTLPESYQQRVYNNTLATVKRQIQEAENPMHAMVISVEAACVDNAILLDYLTSEVALWEPEIGSTDSNIPIVNNCTDDELHFGMPGGNGDLEDEGDESDAIPIASRRRWAATELERFDLGTSDVDSYEGEDGDDADADQE
Ga0307514_1000023385	F047400	N/A	MNTSVRLPLQESMAQSGAGKHDQWRVYITILVVNNETIKSIYILTAIIHLMIKFHGDKLLDCLCQEIN
Ga0307514_1000023394	F063295	N/A	MKLLNKDGAFVEYWLALALTTIPGNSGNLDSILKFVKVKNAAAAIALQIFCVVNIFSCAYEIPEIATSGNTGDGRNEQWIVNSHIDLATWNDVYN