NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000217

Scaffold Ga0307514_10000217


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000217 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157248
Total Scaffold Genes190 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016905Metagenome / Metatranscriptome243Y
F042672Metagenome157Y
F086388Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000217104F016905N/AMPGHHYTPAEYALQWIVESFGNLLFALAERHLTHTYAVVFGFCELKSIDYLVLRYLNTGALPFEESSEEWLHDGEI
Ga0307514_10000217111F016905GAGMPGYHYTPAEYALQRIVESFGNLLFALAEHHLTHTYAVVFGFCELESIDSLVLRYLNTGALPFEQFSEEWLHDGEI
Ga0307514_10000217136F042672GAGGMQQWVLRPQAQEYTVVNPTQYKDCHCWADCVNGFIQVVKQTNTMHIVPVGAVEGPAHWARENAAFGTIDSVWLVNNHVNLDTYWTVY
Ga0307514_10000217179F086388N/AMETGDKTVECLEMAAVKEGNRTLAADDIDWCVSPIDCLSEWHAMNSYPVILNCHHRVVASQIGLQVEPYSLSSV
Ga0307514_1000021776F086388GGAGMAAVKEGNHTLAADDIDWRVSQINCLCEWQVVNYNLVILNCRHWIVVSQIGHQVEPF
Ga0307514_1000021782F042672N/AVVIKRKYKDLHYWSDCVDRFIRVIKQTDKMHITSVEAIVGPAHLVQENNAASDRIDSVWLVNNHLDLETYWTV
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