Scaffold Ga0307514_10000210

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000210
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160404
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (65.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008531	Metagenome	332	Y
F042672	Metagenome	157	Y
F062316	Metagenome	130	Y
F079413	Metagenome / Metatranscriptome	115	Y
F079540	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000210137	F079540	N/A	VCRSIKLTSLRDASEDFRIPNFGQLFRAQIEEDWRHKVSGLVLGYNQNVLLDSIFIKLQNVLLYYHQPFHNPTSVECLGLDCKVEYTNANQGIMPEAHNIWVQYTQSEENDLDNTFQGRVVSLPVLYFSWTPPNQMLQFQERLPAGKALSTFSKRCQTAQQWVLRPQAQEYGVVIPTMFNDLHGWADCVDGFIQVVKQTNKMHTVPVGAIVGPAHLVRENAASDRIDSVWLVNNHVDLDTYWTVY
Ga0307514_10000210144	F042672	N/A	MTQQWVLRPQAQEYVVVIPTKFKDLHGWADCVDVFIRVIKQKNKIHIVPVGAIVGLAHLVRENAASGSIDSIWLANNHVDLDTYWTVY
Ga0307514_10000210168	F008531	AGGA	MVHVIQLALDAFRSSLSVKGRTKSWEAHERDQQFGENESIDVGKSQRLRKEGNARINKVSAMRRGLANIIEKVRIS
Ga0307514_10000210177	F079413	N/A	LDLVSETELRIKVKELLFDDAYLLKVIDDKKAWSMQMEVLDLIYHQFFFTANSLGRQPTTSQFFQPLTLQRLALVAAAIHCALSQYGTAKKVTVMFSQDEYQGKFCPSTVID
Ga0307514_1000021078	F062316	N/A	MQKYDSNCTSRTNWFDLAGTPCLVFEPEPLNIFESLEAILVATFEEEPLEAYFWEQSTVPSPWNTYWTDAAREGGGLDINDPVFGPHWTRYSGAHSWFPCDPEEPYDCEGHNCVGTQSTIGHAAAAATTAKSLGIPLIVVVPPTPTPSELDAYNWHW