Scaffold Ga0307514_10000203

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000203
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 166276
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 112 (61.20%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y
F081952	Metagenome / Metatranscriptome	113	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000203106	F081952	AGG	MVNAPKKNISPLPAGKYGKSTKQSTRRPEQANEGKRCSVVEWVRAVGALRSLQSEKKLAAEKRHETHCLWNEEREKWIEDYVERETAVARKRVQQRP
Ga0307514_10000203120	F081959	GGA	MSMGMRGRMATMRMRIRRKKHHKLMMDQRRMWRTEGIVLESVKIRLYISDL
Ga0307514_10000203123	F010438	N/A	MTRLVFATGRLLELYMWNRRPSMSASNFQAVRYTTRRVAKALAEAPYWQIVEPYWNTAMQRNNIWFIAFEARTKEILK
Ga0307514_10000203124	F004891	N/A	MIVRASGFGMVVGRFSRPLRGVGVLAMPDAGLDTTRLFEFVCMVPLGAGVLRLLVPGVAVGVMIDRRCVADGVEVTRCVISATRELFREDAGVEF
Ga0307514_10000203155	F004778	AGGA	MGHYTGARLAVQLQDVVYQCELTNCRLHGITTDISLSNYSMTCELQSTLEPSEMEWPAWWKHIPCTAHVIQLTLRTFSSSLGGKGGTKSWNAHERDQQFGENESIDIGKSPRLQKPGNARINKVSAIRPGFTMIIEEVSNS
Ga0307514_10000203166	F060560	N/A	MDGHIPSAMFMFTCIALRHALQEWQKNKGVHRKASKSKRQADRPDPSNYCNYKNDGGKNTSCCAAMGRKFVTWPGVADTYTFLINPGNTLPESYQQRVYKNPLATVKRQIQQVANSTPAVVISVEAARVDNAIHLDYLTSKVALEGPEVGSRDPNIPIDTNCMNG
Ga0307514_10000203167	F006048	N/A	MLDITHSNLYQVRVQVDKVKSHFIQSARENIAELYDLHLFESAAERLEFIDSLLADNKYLFRLAKHVEGGVCGPSSTQRESKAANKWPESTLFPGRSNPGIYLHHNLSSSELRW
Ga0307514_10000203168	F004891	GGAG	MLARASGLGMGVGSFSRPRRGVGVIIMPGAGLDTMRRVEVPRGAGVLRLLGPGVAAGVFI
Ga0307514_10000203176	F051592	GAG	VEIPLLELLKDADLHCMEEVGLREVAHNTGNVSKHIDTSVNMAQQEFVIGCIGVGIAVGS
Ga0307514_1000020323	F051592	GAG	VRLHEVENALLEVVMHADLHCMKEVGLREVAHNTGNVSKHVESSVNMARQEFRIGCLRVLIAECSI
Ga0307514_1000020331	F006048	AGGAG	MLKQRPTLDITSSNRYQVCAQVDKVTSYFVQSAKDNIAELYDLHRIECAAERLEFIDSLLADNRYLFPEAEGVEGGVHGLYRTQRESKSANEWPLSTLRPGGSNPAVSADQILSSGE
Ga0307514_1000020333	F081959	GAGG	VMLTGMSATMRMRMRRNKHHKLMTDQCTMWSTEGIILESVKIGQYFSDM