Scaffold Ga0307514_10000196

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000196
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 168261
• Total Scaffold Genes: 186
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (41.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F016905	Metagenome / Metatranscriptome	243	Y
F079403	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100001961	F079403	N/A	CKVFPSGADLAAPLSSQSYAKPEFMGPQNRRDGKHPDAMIKDIRALLDNTQDATHRAAIYSGTQEFIKHKSRNKTYISDEQLHAMELCIYHGIKVHVEGLEGERISQMCRCTGSQTWRGGDRRNDWVWVKRRPGRCYGALNARLPCQLQRLFKIKLQNEDGAFVEYWLALALTTIPENSGNLDPVSKFVQVRKAQAAIALQVFSVGNIVGCAHVVPEIATSSMTGDGRNERWIVNSHIDLATWNDVYN
Ga0307514_100001965	F006048	AGGAG	MLKPLPRLDISRSRLYQIRAQVDKVKSHFSQSARDNIAELYDLHCFESAAERLEFIDSLPADDKYLFLIADRVEGGVRGPNPTQRESKAANKWLASTLLPGRSNPMVYLHQILSSGKQPR
Ga0307514_1000019652	F016905	GAG	MPGHHYTPAKYALQRVVESFGNLLFELAEHHLTHTYAVVFRFCELENIDYLVLRYLNAGALPFKEFSEEWLHDGETXFTFISEMVIGTVSI
Ga0307514_1000019654	F016905	GAG	MPGHRYTPAEYAQQRVVESFGNLLSELAEHHLTHTYAVVFHFCVLEGIDYLVLRYLNTGASPFEEFSEEWLHDGEAXFTFTSETVVGNVSI