NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000191

Scaffold Ga0307514_10000191


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000191 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)171945
Total Scaffold Genes202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (53.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008531Metagenome332Y
F038958Metagenome164Y
F042672Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000191135F042672N/AMVVPTKYKDPHVWADCIEGFIRVVKQTDMMHIVLGGAIVGLAHLVRENAATDRFDSLRLVNNHVDLDTYCTE
Ga0307514_10000191155F042672N/AVVDSTKYNDLHGWADCVDRFIQVVKQTDMMHIVPVRAIVGPAHSVLANAASDRIVSVWLVNNYVDLDTYWTVY
Ga0307514_10000191194F004778AGGAGVKDVLDHFELTNSRLLGITTNNASSNYSMTCELQSTLEAFEIEWAALRNYIPCMAHVIQLASGAFMSSLSVKGGTKSSEANERDQHFGENEIIDIKKSQRLRKEGNARINKVSAMRPGLAKIIEKVRIS
Ga0307514_1000019121F042672N/AVVIPTKFKDLHGWADCVDGFIRVVKETNKIHIVPVVATVGPSHLMRENGALGSIDSVWLVNNHVYLDMYWTVY
Ga0307514_1000019192F038958N/AMTEVIANLFVDVHLSKPKLTLFLDGNCFVIPSTVSEYSLWQMLQRVREDGSTSSPSHASNDNRRSSLDTASQEM
Ga0307514_1000019193F008531GAGMLAAMGNHIPCIVHVIQLALDAFISDLGVKGHTNAWEAQEHNQQFGENERTDIGKSQRLRKEGNARIQRVLAMRLCLSRIFEKVHI
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