Scaffold Ga0307514_10000179

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000179
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 179648
• Total Scaffold Genes: 223
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 152 (68.16%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F048690	Metagenome	147	Y
F060560	Metagenome	132	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000179108	F004778	AGG	MGARLAVRLKNVLNHFECTNSCLFGITTDNVSSNYSMTHELQSTFEASGIECPELRNHIPCMAHGIQLALGAFMSSLSVKGSTKSWEAEEHNQQFGENESIDIGKSQKLRKEGNDRINHVLAIRPGLAKTIEKVCIS
Ga0307514_10000179115	F081952	AGG	MVNALKKNLSPLLAGKYGKSPKQSTRRHHHANEGKSGLEAERVRALGALRSLRSKMKLLAKK
Ga0307514_10000179127	F008531	AGGA	VHGAHHTAGFDAFMSSLGVKGRTKSWEAHERNQQFGENESINLRKSQRLRKEGNARMNKVSAMRPDWATIIEKVHIS
Ga0307514_10000179174	F010438	GGAG	MWNRRPFMSASDLETVSYATQRVAKALAEAPHWQIIETYWNTAMQQNNIWSIAFEARTREILKEVC
Ga0307514_10000179207	F004891	GGA	MIAQASGFKMGVGRFSSPLRGVGVLAMPDAGLDTTRLIESLCMVPLGAGVIRLLLPGVAVRVIIDHRCVADGVEVTH
Ga0307514_10000179210	F046750	GGA	MINEKDGHIPLPLIMFTCTALRHALLEWQKNKGVHPKASKSKLKPDRPDSSNYFNYKNDGGKIASCCAVLGRKLLTSFSVVDTYTFLMNTWNTLQDSYQQRVYNNTLATVNRQIQHAENPSPAVVISMEAVRVDNAILLDYLACEVALEEPEIGRTDLNIPIDNNCTDDELHFGMPVGSGDYEYKRDESDDRNAIPTAS
Ga0307514_1000017928	F060560	GGAG	MNNGVHLKASKSKLTVDRPDRLNYFNYKWNGGKKASCCPATVRMLFTLPGVVDRYIFLMSTKITLPESYQQRVYQISLATVKHQIHQAENPTPAVVISVEATCVDNAILLHYFTSEVPHKGPEIRSTDPNIPIDNNCMDDLLHFEIPGGCGDYYNEGDKSYECAAICTVSRQ
Ga0307514_1000017940	F063295	N/A	MCRCAGRQSWCGGDQWNDCLWVKECPGRCYGALNGRLPCHLQRLFKMKLLNKDGAFVEYWLAPELTTISDNSGNLDPISKFVQVRTALAAVAFQGFNMENIVCCVHVIPEIPTSSKTGVDWNER
Ga0307514_1000017955	F006048	AGGA	MHKGDLERGMLKQWPTLDITSSNWYQVRAQVDMVQSYFIQSARDHLTELFDLHCFESDAECLEFIESRLADNRYLFPIAEWVEGVVHSPNPMQRESKAAIESPVSTVLPGGSNPTVNLRQILSSGQ
Ga0307514_1000017980	F048690	GAG	MLQDMDNMEASCVFYVMVGMFTHLEQSKTSRLTVNKTGIVRLTVQHDLIVSISFLYYPGDSLRQTSADVLSLEQCHIYNRQ