Scaffold Ga0307514_10000176

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000176
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 180522
• Total Scaffold Genes: 221
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 142 (64.25%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F036505	Metagenome	169	Y
F046750	Metagenome	150	Y
F051592	Metagenome	143	Y
F079413	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000176120	F006048	AGAAG	MLNQLPALDITRSNRFQVRVQVDKVKSHFIQSAGDNIAELYDLHLFESAAERLEFFDSLLADNKYLFPVAEHVEGGVRGPNPTQRESKADDEWLPSTLLPGGSNPVVYLHQILSSGE
Ga0307514_10000176121	F010438	GGAG	MWNREPFMSVSDLEIVRYATQRVAKALAEAPHWQIIETYWNTAMQQHNIWSIAFEARTKKILKEVC
Ga0307514_10000176122	F004891	N/A	MIVWAPGLEMGVGRFSRPLRGVGVLAMPDAELDTTRRAEFICKDPPGVGVQRLLVPSLVVGEFIDCCSVVDGVEVTR
Ga0307514_10000176133	F051592	N/A	MRLHEVENPLLEVVKHANLHCMEEVGLREVAQYTGNMLKHVESSVDMARREFGICFLGVGIAERSI
Ga0307514_10000176138	F004891	GGA	MIAWASGLRMGVGRFSRQLRGVGVLAMPDAGLDTTRHVESVCEVPLGAGVLRLLVPGMPVGVIIQRRCVADGV
Ga0307514_10000176139	F010438	GGAG	MWNRRPFMSASDLKMVSYATQHVAKALAEAPHWQISEMYWNTAMQQNNIWSRAFEARTREILKEVC
Ga0307514_10000176140	F046750	GGA	MIDDKDGHIPLPLIMFTCTTLRHALLQWQKNKGVHPKASKSKLNADRPDRSNYFNDKNNSGKIPSCCTATGRKLLSLPGIAYTYTLLMNAWNTLPESYQQRVYKNTLATLKGQIQQAENPTPAVVIGVEAARDDNAILLDYLTSEVALEEPEIGRTDPNILIDNNCMDDELHFGIPGGSGNYQGEGDESDQHDAISTTSRRRRAPTELERFVLGTCDVDSYEG
Ga0307514_10000176152	F004891	GGAG	MIARASGLGMGVGRFSRPRRGVGVITMLDAGLDTTRRFEVPPGAGVLRLLVPGVAVGVFIDRRCVAEGGKSHALIDICNARIVQRR
Ga0307514_10000176153	F010438	GGAG	MWNRRPFLSASDLETVSYATQRISKALAEGPHWQIIETYWNTAMQQNNIWSIAFEAHTKEILKEVC
Ga0307514_10000176154	F006048	N/A	LDITRSNRYQVQAQVYKAKSHFIQSARDNVEELYDLHRFESAAERLEFIDSLLADNKYLFPIAERVEGGVRSPNPKQRESKAANEWLASTLLPGGSNPTVYLHQILSSGE
Ga0307514_10000176206	F036505	N/A	MAHVIQLALGEFMNSLGVKCRTKSWEAHERAQQFGENERTDIGKSQRLRKEGNARINKVLAMRSGLAKIIEKVCISTYFESAETDLYIAENACCIDYTDTWSSKQVY
Ga0307514_10000176221	F079413	GAG	LADGSRQTIVHIYWLDLSSETELRIQVKELLFDDAYLSKVIDDKKSWFTWMEVLDLIYHQFFFTANSLGRQPTTSQFFQPLTLQTLALVAAAIHCALSEYATGRKVTVMFSHDEY