Scaffold Ga0307514_10000164

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000164
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 188588
• Total Scaffold Genes: 202
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (62.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F047400	Metagenome	149	Y
F051592	Metagenome	143	Y
F059517	Metagenome	133	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000164130	F051592	N/A	VDNPLLEVVKHADLYCMEEVGLREVAHNTGNRSKHVESSVNMARREFGIGCLGVGIPKRS
Ga0307514_10000164145	F004891	GGA	MIARASGLGMGVGRFSRPLRAVGVLAMPDAGRDTTRRVESVCKVPPGAGVLRLLVPSVAVGVFIDHRSVADGAETMR
Ga0307514_10000164146	F059517	N/A	MLDITCSNRYQVQAQVDQVKSHFIHPARDNLAELYDLHRFESAAERLEFIDSLLADTKYLFPMAEHVEGGVCGPNPTQRESKAANK
Ga0307514_10000164147	F047400	AGGAG	MAQCSAGKHDQWRGYMTVLVVNDGIIKSISILTAVIRPIMKFDVDQLQDCFCPEAKWTLAIC
Ga0307514_10000164149	F081959	GGA	MSTGMRARMGTMQMRMKQHCKLTMDQCRMWRTVGIVLESMKTEQYISVL