NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000162

Scaffold Ga0307514_10000162


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000162 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)189129
Total Scaffold Genes185 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (35.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F008531Metagenome332Y
F016905Metagenome / Metatranscriptome243Y
F042672Metagenome157Y
F080709Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000162127F080709N/AMVELSTRKREIRGDGGNHHEKLGLEKISCASQLTIPDTAGTIPDPAGNITNTGSSKPNQASRTPDFS
Ga0307514_10000162132F008227N/AMDTQPPPPGGSGSNTGRLAGTASTTDILGTQECRYKLVHRDAANAATKHMIQDVHLKIVRKTGSRRNRKQHVVGCDYIHIDAISGQFTM
Ga0307514_10000162159F042672N/AVVIATKYKDLHGWADCVDRIILVVKQTDKMHIIPVGAIVGPAHLVRENHTASDRIDSVWLVNNHVDLDTYWTVY
Ga0307514_100001622F016905GAGMPGHHYTPAEYALQQKVESFARLLSKLEEHRLTHIYAVVLLFCQYENIDYLVLRYLNTGALPFEEYSEEWLFDGEI
Ga0307514_1000016234F008531N/AMAHIIHLALGAFMSSLGVKGHTKSCEAHECDQQFEENDSIDIGKSQRLRKEGNARIHKVSPMRPGLAKIIEKVYIATYFEYPETDL
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Biomedical Sciences Research Center "Alexander Fleming"
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