NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000147

Scaffold Ga0307514_10000147


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000147 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)200849
Total Scaffold Genes211 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (36.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006048Metagenome382Y
F008531Metagenome332Y
F026456Metagenome197Y
F060560Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000147169F026456N/AMFDHMDGVMRALAKMKTQWKEDLFFAMKFLRQKLSKYYTEVPPMNSMLLSSAHLLDSFGKLQSFWKWDKGMDINPEDETSYTNQY
Ga0307514_10000147209F060560GGAMIYVKDSHIPSPLIMFTCTALRHALLEWQKNKGVHPKAGKSKLKAYRPDPSNYFNHKNDSGKIASCCTETGRTLLTSPGVTYMYTFLMNTWNTPPESYQQRVYNNTLATVKRQIQQAENPMPAVVISVEAARVDNAILLDHLASKVALEEPEIGSADPNIPIDNNCTDDELHIGMPRGSG
Ga0307514_10000147210F006048AGGAGMLNQWPTVDSTRSNRYQVGAQVDKVKSHFIQSARDNIAELYDLHHFESAAEHLEFIDSLLADNMYLFPAAERVDGGVRGPNPTQRELKADNEWLASTLFPARGNPTVYLHQNLSPGE
Ga0307514_1000014756F008531N/AMTQESQSTLVASAIKCTALRNHIPCMADVIQIALGAFMSSLGVKGHTKSWEAHERIQQFGGNESIDIGQSQRLRKEGNARIHKVSAMRLG

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