Scaffold Ga0307514_10000147

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000147
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 200849
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (36.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F026456	Metagenome	197	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000147169	F026456	N/A	MFDHMDGVMRALAKMKTQWKEDLFFAMKFLRQKLSKYYTEVPPMNSMLLSSAHLLDSFGKLQSFWKWDKGMDINPEDETSYTNQY
Ga0307514_10000147209	F060560	GGA	MIYVKDSHIPSPLIMFTCTALRHALLEWQKNKGVHPKAGKSKLKAYRPDPSNYFNHKNDSGKIASCCTETGRTLLTSPGVTYMYTFLMNTWNTPPESYQQRVYNNTLATVKRQIQQAENPMPAVVISVEAARVDNAILLDHLASKVALEEPEIGSADPNIPIDNNCTDDELHIGMPRGSG
Ga0307514_10000147210	F006048	AGGAG	MLNQWPTVDSTRSNRYQVGAQVDKVKSHFIQSARDNIAELYDLHHFESAAEHLEFIDSLLADNMYLFPAAERVDGGVRGPNPTQRELKADNEWLASTLFPARGNPTVYLHQNLSPGE
Ga0307514_1000014756	F008531	N/A	MTQESQSTLVASAIKCTALRNHIPCMADVIQIALGAFMSSLGVKGHTKSWEAHERIQQFGGNESIDIGQSQRLRKEGNARIHKVSAMRLG