Scaffold Ga0307514_10000146

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000146
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 201531
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 162 (70.13%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F019765	Metagenome	227	Y
F038958	Metagenome	164	Y
F051592	Metagenome	143	Y
F062316	Metagenome	130	Y
F078047	Metagenome / Metatranscriptome	116	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000146101	F010438	GGAG	MWNRRSCMSASGLETVSYALRRVSKALADAPHWQVIEMYWNTAMQQNNIWSIAFEARAKEILKEVC
Ga0307514_10000146102	F004891	GGAG	MIPRASGLRMGVDRFSRPLRGVGVIAMPNAGLDTTRRAEVPLGAGVLRLLVTGVAVGEIIDHRCVADGVDVTR
Ga0307514_10000146108	F051592	GAG	VRLHEVENTLLEVVKHANLHCMEEVGLREVAHNTGNVSKHVESLVNMARREFSISCLGVGIAERSI
Ga0307514_10000146153	F008227	N/A	MHTQPPPPGESGSNTRRLAGATSNTDILGTQQERRHKLVHRDAPNAATKHMTQDAYLKIVRKTGSRKNKKQHAVGCECIRIEAIRGQLTA
Ga0307514_10000146158	F004778	N/A	VLNRFELTDGRLLGITTDNASSNYSMTGKLQSTLEASRNEWPALRNHIPCMAHVMLLALGAFMSSLGVKGRTKSWKAHEREQQFGENGIIDGGKSQRLREEGNDRINKVLAMKRGLAKIIEKVRIS
Ga0307514_10000146178	F019765	GAG	MLQVMNNMEVRCAFFVKVSTFTHFKQSKISLLTVTKSGIVTLTIKHDMIVSVSFM
Ga0307514_10000146182	F038958	N/A	MTNFMASLCVDVHPSKAKLTLFRIGNCFLSASTVSAYSLRQMLLMVVADHRTRSSRNVLYDRRSTRVDIAFHGIYAKTNPNMR
Ga0307514_10000146183	F008531	AGG	MSSLGVKGHTESWEAHERNQQIGENESIDIEKSQRLRKEGNARINKVSAMRPGLAKIIEKVRIS
Ga0307514_10000146201	F062316	N/A	MVATIVSTSCSDLSDLISVTTRTDLHIGMHRYNRHCYSRTNWFDLAGNPLLVSELEHLNALESIEAVRAATFEEDPLEANFWEQYHVPSNWNVYLTDTARESGGLDINDLVYGPYWTNYCGLHFGLFTDCDPEETCDCEGYNCVRAQSTVGHAAAAATTATSLGIPLIFIVPPTPTPSEIDAYNLHW
Ga0307514_1000014632	F080709	GAG	MRGDAGNHHDKLELKKILCASQLTSVPDTGGIIPDLVGKKTNTWSSKPNQVSLTPDLSFPLVFSISFPC
Ga0307514_1000014691	F078047	GAGG	MHWLDGSSRIWVVGGNFSGTVEGGWMGDNLEFFGKVLGIFLVFCLFYYYIIHIHT