Scaffold Ga0307514_10000144

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000144
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 202712
• Total Scaffold Genes: 250
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (63.60%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F042672	Metagenome	157	Y
F047400	Metagenome	149	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079403	Metagenome	115	Y
F079414	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000014411	F079403	GGA	MIKDFRALLDNTQDATHRMAICSGTREFIKHKSRKKMYISDEQLHPMELCTYHGIKVKVEGLDGECISQMCRCTGSQSWCGGDPQNDWVWVKQRPGRCYGALTGRLMWQLQRLFKIKLQNENGAFIEYWLPLALSKIPENSGNLDLVSKFVQVRKALAAVALQVFSMGNIVGCAHVIPEIATSSKTGNGWNERWIVNSHIHLATWNDVYN
Ga0307514_10000144112	F063295	GAGG	MLNGHHPCQLQQIFKIKLLNEDGAFVEYWLALTLTTIPANSGNLDPILKFVQVSNALAAVTLQVFSVQNNVGWAYVIPEIATSSKSGDGRNQQWIVNSHIYLATWNAVYN
Ga0307514_1000014412	F047400	GGA	MNTFVLLPLQESIVQSGAGKHDQWREYMTVLVVNHGSIKSIRILTVVIRWMIKFDVDKLRDCFLQEVEWTLAIC
Ga0307514_10000144129	F042672	AGG	VGILKKLKDLHRWADCVDTFIQVVKQKNKMDFVPMEEVLRLANLVWENATSGGIDSLWLVNNHAYLDTYWTVY
Ga0307514_1000014413	F006048	AGGAG	MLKQRPKLDTTRLNQYQVQAQVEKDKFHFIQSARDNIEELYDVHRCESAAECFEFIVSLLADYNYLFPVAECVEGGVRGANPTQRESIAANKWPASTLLPGGSNPAAYLHQILSSSE
Ga0307514_1000014414	F010438	GGAG	MWNRWPFICASDLEMVSYATQRVAKALAEAPHWQILETYWNTTIPQNNIWSIAFEACTKEILNEVC
Ga0307514_10000144151	F010438	N/A	MTRLVFAMGRLLGLYMWNRRLYLSASDVDTVRYAIGCVAKALAEAPHWKIIETYWNTAMQQNNIWSIAFEVRTKEILNEEY
Ga0307514_10000144187	F080709	N/A	VLVEVSTRKREIGGNGGKHHEKLGHKRISCVSQLTIPDTAGEIPDPAGNDTNTKFSKPNRVSHTPHFS
Ga0307514_1000014452	F079414	N/A	MVIYSQFIEMCAWVYGTIYSWRPETDLYLSSVPAVFAAIPVLYTIAESPLESLLESLLVSLLESLLERALHREK
Ga0307514_1000014474	F042672	N/A	VVIPTKFKDLHGWADCVDGFIWVVKQTNKMHIVPVGAIVGPAHMVWENAASGGIDSVWLVNNHVDLDTY