Scaffold Ga0307514_10000141

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000141
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 206709
• Total Scaffold Genes: 223
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 142 (63.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F046111	Metagenome / Metatranscriptome	151	Y
F051592	Metagenome	143	Y
F079403	Metagenome	115	Y
F079414	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100001411	F004778	GAGG	LDRFELTDGRLLGITTDNASSNYSMTSELQSTLEAPGIEWPALRNHIPCMAHVIQLALGAFMSSLGVKGCTKSWEAYERDQQFGENESIDIGKSQRLRKEGNARINKVSAMKPGLAKIIEKVRIS
Ga0307514_10000141102	F004778	N/A	VLDRFELTDGGFLGITTDHASSNYSMTSELQSTLEASGIEWPALRNHIPCMAHIIQLALGAFMSHLGVKCRNKSWEAHERDQQFVENESIDIEMSQRLRKRGNARINKVSAMKPGLAKIIEKVRIS
Ga0307514_10000141166	F079414	GGCGG	MDVYQSSLPAVFAAILVLYTIAENPLESLLESLRESLLESLLECLFESLLESLPERALHREE
Ga0307514_1000014120	F080709	N/A	MVELSTRKREIRGDRGNHHEKLELEGISCASQLTIPDTVHTSPDPVGNITDTGSSKSNQASRTPDFS
Ga0307514_1000014123	F046111	N/A	MEVSSLEPIVIRANLGDFIGFQIIQIAAQRASFQPIIIADVITIVATHRDVERYSSGLGTCTVGIQ
Ga0307514_1000014138	F051592	GAG	VRLHKVQNPLLEVVKHADLHCMDEVGLQQVAHDTWNLSKQVGSLVNIARREFGNAGLGDGIIECSI
Ga0307514_1000014186	F079403	GGA	MIKDVRALLDNTQDATHRLTIYSGTREFIKHKSRNNTYILDEQLHAMELCIYHGIQVQVEGLDDERIPQMCRCTGSQSWHRGDRRNDWVWVKQRLGRCYGVLNGRLPWQLQRQFKMKLQNEDGAFVEYWLAPAHTTIAENSGNLDQVSKFVQVRKAPSTVGFQVFSVGNIVGYAHVMPVIPIGSKPGDRQNERWIVNSHIDLATWNNVYNELRENCFVHAGRRNTRRDIRSVTHRIAIPMHVRTQ