NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000128

Scaffold Ga0307514_10000128


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000128 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)211461
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)170 (68.83%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F008227Metagenome336Y
F019765Metagenome227Y
F046111Metagenome / Metatranscriptome151Y
F079414Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000128156F079414N/AMELYTAGGRRCTYLYQSSLPAVFTAILVLYTIAESLLEILFESLLESLLESLFESLLESLLERASHQEE
Ga0307514_1000012822F019765GAGMLQVMDNMEASCILYVKVSTFTHLEQSKIFLLTVNKSGVVTPTVQHDMIVSVIFM
Ga0307514_1000012842F046111N/AVKYDLFMDVSSLEHVVIRAKLGDIIGFQIIQIAAQKASFQLTIIALAIEIVSTYRDLERYTSGLGTCTVGTL
Ga0307514_1000012859F004778N/AVLDCFELTDGCLLGITTDNASSNYSMTRELQSTLEISGIEWPALRNHIPCIAHVIQLALGVFMSSLGVKDRTKSWEAQERDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLGKIIEKVCIS
Ga0307514_1000012863F019765GAGMLQVMDNMEASCVFYVKVGMFTHLEQSKISLLTVKKSGIEMLTVRYNMIVRVIFM
Ga0307514_1000012864F008227N/AMDTLPPPPGENGLNTSRLVGAISNMEILGTQQECRHKLVHLDAANAATKRMTQDANLKIVRKTESRNNRMQHVVGCECIHINAIGGQLAV
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Institute for Fundamental Biomedical Research
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