Scaffold Ga0307514_10000127

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000127
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 211607
• Total Scaffold Genes: 228
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (65.35%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F048690	Metagenome	147	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000127102	F004778	GAG	MKEILDHFEQTDSHLHVITTDDASSIYLITGKFQTTLETSGMKWPALRNHIPCMAHVIQLALGAFMSSLGDKGSTKSWEANECDQQFGENESTDIGKSQTLQKEANARINKVLAMRPGIAKIIEKVCISTYFESAETDLHIAENVCGIDYADTWFSQ
Ga0307514_10000127107	F008227	N/A	MDTQPPPPGESGLNTGRLAGAKSNTEILGTQQERRQKLVHRDAADVATKHMTQDAHLKIVRKTGSRRKKNRNAVGCEYIHIDAISGQFTV
Ga0307514_10000127113	F004778	N/A	VLDRFEITDGRLLGITSDNASSNYSMTRELQSTLEASGIKWPALRNHIPCMVHIIPLALDAFMSSLGVKGSTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARMNKVSAMKPGLAKIIEKVHIS
Ga0307514_10000127136	F060560	N/A	MFTCTRLLHALLEWQNIEGVHQKASKSKLKADRPDRSNYFNYKNDGGKNPSTCTAMGRKFLTSSGVADTDTSSMNTWNTVPESYQQRVYKNILATVLCQIQQAENQMPAVVISVEAARVDNSIHLDYLTSKVALEEPNITCTDPNIPIDNNCTDNKLHFGMPGGSGD
Ga0307514_10000127138	F004891	GGA	MIAPVSGSGMRVGRISRPPRGVGEQAMPDAGLDTTQSVESVCEVPPRAGVLQLLLPGMVVGVIIDRRCVLDRLEVTHRVISTTRELFSKDEGAVF
Ga0307514_10000127145	F051592	GAG	VSLHEVENPLLEVVKHGDLYCMEEVRLREVATNMGNLSKHVESSVNMVRKVFGISCHDVGTTECFL
Ga0307514_10000127166	F048690	GAG	MLENMDNMEASCVSYVKVSIFTHLEQSKTFLSTVNKSGIVRLTVQHDKMVSFSFTYYPRDSLRQTSADVFFTDQCHIHS
Ga0307514_10000127215	F008531	AGGA	MAHVIQLALGAFMSSLSVKGRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARMNKVSAMKPGLAKIIEKVHIS