Scaffold Ga0307514_10000121

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000121
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 219192
• Total Scaffold Genes: 274
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 182 (66.42%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016905	Metagenome / Metatranscriptome	243	Y
F019765	Metagenome	227	Y
F038958	Metagenome	164	Y
F078047	Metagenome / Metatranscriptome	116	Y
F079403	Metagenome	115	Y
F079540	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000121101	F079540	GGA	VLGYDQNVLIDTIFVQPKIGLLYCRQTFHCPTSVETLGLDCKVEYTDANHGIMPESHNIWVKHTDSDLDNTFQGRVPSFPILYFSWTPTNQILQFQECLPAGKSLSTFSMRCKKTQQWILRPQPQDYAVVIPTKYKDPHGWADCVDGFIQVVKQTNKIHIVPVGAIVEPAHLVRDNNAASDRIDSIWLVNNHVDLDTYWTVY
Ga0307514_10000121219	F019765	AGG	MLQVMDNMEASCIFYVKVGTFTHLEQTKIFLLTVNKSGIVMLTVQHDLIVSIIFM
Ga0307514_10000121249	F080709	N/A	MVELSTRKREIRGDGGNHHEKLGLVRILCASQLTIPDRAGTSPDLAGNNTDTWSSQPNQASSKPNQASRTPDFS
Ga0307514_10000121252	F078047	AGGA	VGGYFSGTLEGGWMGDNMEFFGEVLGRFLVFCLFDYYSIHIHV
Ga0307514_10000121257	F079403	N/A	MEPQNHCDGNHPDTMINDFRALLGNTQDATHCVAIYCGPQRVFKHTSCNKTYILDEQLHAMELCIYHRITLQVEGLDGQRISPMCRCTGSQSWCGGDGWNDWVKVKLCPERCYRALNGRLPWQLQRLFKIKLQNEDGAFVEYWLALALTTIPENSGNLDPISKFVQVRKAPAAVAFQVFSVENIIGCAHVIPEIATSKTGDGWNERSLVNSHIDLATWNDVYN
Ga0307514_1000012166	F038958	GGA	MMDIMASLFVEVHLSKVKLTLFCHGNCFLIASMDSEYSLWELLLSVAADGSTRSLRNALYDRCSFRFEIEFHGLSAKINPNMR
Ga0307514_1000012170	F016905	GAG	MPGHHYTPAEYALQQKVESFGRLLSELEEHRLTHIYAVVFLFCQLENIDYLVLRYINTGALPFEEYSEEWLFDGEA
Ga0307514_100001219	F088003	AGG	VRTVHKMKPRDVGSPGIFADKFPNKHPSEWTKQALITLEEATEAYMVEATAKFHR
Ga0307514_1000012199	F080709	N/A	MVELNTRKREIRGDGGNHNEELGLERISCASQLTIPDTAGMSPDPAGNNMDTRLFKPNQASRTPDFT