Scaffold Ga0307514_10000118

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000118
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 220646
• Total Scaffold Genes: 198
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (35.35%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F016905	Metagenome / Metatranscriptome	243	Y
F026456	Metagenome	197	Y
F046750	Metagenome	150	Y
F079540	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000118119	F006048	AGG	MVDIACTNWYQVCAQVDKVKFHFIQSVRDNIAELYDLHCFESAAERLEFIDSLLADNKYLFPVAERVEGGVCGPNATQRESKADNELLASTLLPGGGNPTVYLHQILSSGE
Ga0307514_10000118120	F046750	N/A	MFTCTALRNALLEWQKNKGVHPKASKSKLKVDRPDRSNYSNCKNDGGKIAFCCAVMGRKMLTSPGVADTYTFLMTTSNTLPESYQQRVYNNTLATVKRQIKQAENPTPAVVIRVEAACVDNAILPDYLASEVALEEPEIGSTDPNIPIHNNCTNDELHFGMPGGSGDYKNDGDESDDRDAIPTASRXRRPATEPESLGLGTCDVDG
Ga0307514_10000118169	F026456	N/A	MTVHNNMLDHMDGVMRALAKKKTKWREDLFFAVNLARQKLSKYYAEVTPTTGMLFISAHMLNSFWKLXSVRKWDKGMDNHPEHEISSTTEYQEAFLI
Ga0307514_10000118178	F016905	N/A	MPGRRYTPSKYALQKIVESFGNLLFKLAEHNLTHTYAVVFRFSQLENIDYLVLRYLNTGALPFEEFSREWLFDGEA
Ga0307514_10000118179	F079540	N/A	VSRGIKLTSLXDASEDFGIPNFDQLFRAQIEEDWGQEVSGLVLGYDQNVFLDSITVELQNGLLYYRQPFHCPISVERLELDCKVEYIDANQGIMPEADNIWVQYTQSEENDLDNTFQVRIPSVPVLYFTWTPPNQILQFQERLPAGKASSIFSKXGQKTQEWVLRPPAQEYAVVIPSKYKNLHGWADCIDRFIWIVKQTYKMHTLPVGAIVGPAHLVWEDDASGGIDSIWL
Ga0307514_100001182	F010438	N/A	MTRLVFATGRLLELYMWNRRPFMSASDLETVSYTTQRVVKALAEAPHWQIIETYWNTAMQQNNIWSIAFEERTKEILKEVC
Ga0307514_100001183	F006048	AGGAG	MLNQRPTVDITRSNRYQVRTQVNKVKSHFIQSVRDNIAELSDLHRFESTAERLEFIDSLLADNKYLFPVAERVEDGVRGPNPAQRESKADNEWLASTLLPGGGNPAVYLHQILSSGE
Ga0307514_1000011841	F006048	GAG	MPKQRPTLDITCSNWYQIQTQVDKVKSHFIQSAKNNIAQLYDLHCFESDAERLEFVHSFLADNKYFFPVAKRVEGGVSGPNPTQRESKAANEWPGSTILPGRSNPAV
Ga0307514_1000011874	F016905	N/A	MPGHHLTQSELALQLTVECFGNLLFALEEHHLTHIYCMFFHFCELENIGFLVLKYLNTSTLTFEEFSEKWLFDREV