Scaffold Ga0307514_10000111

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000111
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 225943
• Total Scaffold Genes: 292
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 185 (63.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F042672	Metagenome	157	Y
F060560	Metagenome	132	Y
F078047	Metagenome / Metatranscriptome	116	Y
F079413	Metagenome / Metatranscriptome	115	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_100001111	F060560	N/A	LEWQKNKGVHPKASKSKLKADRPDRSNYFNCKNDGGKIVSCCTVTGRKLLTSPGVVDTYTFLMNTWNTLLESYQQRVYNNTLATVKRQIQQAENPTPAVVISVEAARVDYAILFDYLTSDVALEEPEIGSTDSNIPIDKNCTYDKLHFGMPGG
Ga0307514_10000111100	F078047	AGGA	VGGYFSSTLEGGQMGDNWEFFGEVFGLFLVFCLHYYNIIHIHA
Ga0307514_10000111147	F008227	GGA	LAGATSNTELLGTPQEHRHKLVLRDAANAATKHMTQDAHLKIIRKTESSKNIKQHAVGCKYIHIEANGVQLTV
Ga0307514_10000111152	F008531	AGGA	MVHVIQLALGAFMSSLGVKGCTKSWEAHERDQQFGENETIDLGNSQRLRKQGNARINKVLAMRPGFAKIIEKVCIS
Ga0307514_10000111165	F042672	AGGAGG	MTEQWILPPQAPKYAMVIPTMYRDLHGCADCVDRFIRVVKQTDMIHIVPVGAIAEPAHLVRQNVASDRIHSVCLVNNHVDLNTYCTVY
Ga0307514_10000111217	F004778	N/A	MGQPTGARLAIHLKEVRDHFELTDICLLVITTDNASSNDSIAWALQSTLDASGIVWPAMRNNIPCMAHVIQLALGAFRRSHGVKGRTKSSEAHERDQQFGENESTAIGKSQRQRKEGNARINNVSAMQPGLAKLIVNVRISRHGEAP
Ga0307514_10000111236	F081959	GGAGG	MVGLTCEPVMSTDMNTRMVMLRIRMRRKKDRKLMMDQCRMWRTEGIVLESVKIGQYISDV
Ga0307514_10000111268	F079413	GAG	MQVKKLLFVDVYLSKVINDKKSWFMRIEQLDVIYHQFFFTANNLGRQPTTLQFFQSLTPHTLALVAVAIHSALSKYATGKKVTVMSSQDEYRGKFCSSTVMDCNYSSSHCTHQVHMVGYFIPPPPP
Ga0307514_100001113	F081959	GAG	MSTGMRARMATTRMRRKKHCKLMMNQRRMGRTEGIVLESVKIGQYISDM