Scaffold Ga0307514_10000106

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000106
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 230739
• Total Scaffold Genes: 282
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 183 (64.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F062316	Metagenome	130	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000106176	F004778	N/A	VLDRFERTDGHLLGIPTDNTSSNYSMTRELQSTLEASGIKWPALRNHIPCMAHVIELALGAVMSSLGVKGRTKSWEARERDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLAKIIEKVRIS
Ga0307514_10000106181	F008227	GGA	LAGATSNTELLVTQQERRHKLVHRNAANVATKHMTQDAHLKIVRKTGSSKNKKQHAVGCKYILIVANVGQLPE
Ga0307514_10000106203	F004778	N/A	VLDRFDVTDGHLFGITTDNASSNYSMSSELQSTLESSAIKWPALRNQKTCMAHVKQLALGTVMISLSVKGRTKSWEALEHDHQFGENEKIDIGKSKRLQKQGNTRINKVSAMKPG
Ga0307514_10000106246	F062316	N/A	MFATIASTNYDDLPHLISVSTLTDRHIRMHLYDSNCTSQTNWFDIAGTPCVVFEPEPSNSFESIEAILAASFEEEPLKAYFWEQSAVPSPWNTYWTDAAREGGRLDINDPVFGPHWTRYTGAHSWFPCDPEEPCDGEGHNCAGTYSTIGYAAAAATTAKSLAIPLIVVVPPTPTSSEIDAYNWHWWMCLVRCDVKFNGTPSGPGIHPGSGHHHGTHQHGQQKCGV
Ga0307514_10000106248	F092994	AGG	MAPAGTVPGHTGSAPMDLRAGRRRILAEERAKRFGDGGCLYCGGFNHRAAECTARKKTQTFKASGAEVKEVGTNEGSEEPGKD
Ga0307514_1000010671	F004778	N/A	VVDRLECTERCLLDITPDNASANYSMTWELQSKLESSAIQWPTMRNQIPCTTHVIQLALGAFMSSLGVKCCTESWEAHKGDEHFGQNVCIDIRKSQSLRKRSKARITKVSAMKTGLAKIIEKVRMS
Ga0307514_1000010699	F008531	N/A	MTRELQSTPEASGVDWPPLRNHIPSIAHVMQPALGAFIRRPAVKGLTKSWEAHYRDQQFGENERIDIGKSQRIQKEGNVGINKVSGMKPGLAKIIEKVRISR