NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000102

Scaffold Ga0307514_10000102


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000102 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)236545
Total Scaffold Genes270 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)186 (68.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038018Metagenome / Metatranscriptome166Y
F060560Metagenome132Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000102139F038018GGAVAQIPEHLNYYYSEWKDQQSALWKQVGKAKGWRAARCQHMLVSELLSIKECDQVVVDFLVATEVGKFPPR
Ga0307514_10000102145F060560GGAMIDHKDRHIPSPLIMFTCTTLCHALLVWQMNKGVHLKASKSKRKVDKPDSLNYFNYKNNSGKISFFCAVMSSKLLTSPGIADSYTFLMNPWNTLPESYQQRVYENTLATVNRQIQQVEKPMPSMVISMEAAGNDKDILLDYLSSDVALEKPGIGRADPNIPIDNNCTDDKFHFRIPGGSGDYQDECDESKERDVIATASWQ
Ga0307514_10000102192F092994AGGAMDLIAGRRKISGEERAKRFTDGRCLNCGGFNHRAVDCAVRKKASLLKVAGAEIKEAEGNEGLEGKGTEQVD
Ga0307514_10000102224F060560GGAMINDKDSHIPLPPIMFTCAVLHHALLQWQKNKGVHLNPSKAKFKPDRPDRSNVFNSKTHGGKNTSCSAAMGHMWLTSPGVADNYTLLMIMLNTLQESYQQMVYTTTLATVKRQIQQRQTPTPAVVIRVDAARVNNVTLLDYLTSKVALEEPEIGSLDATSR
Ga0307514_1000010281F092994GGAMDLSTDRRRISDAERAKRFADGRCLYCGGFNQRAVDCAVRKKARLFKAAGEEVKQPEGKEDSREKGKEQVN
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