Scaffold Ga0307514_10000086

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000086
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 255868
• Total Scaffold Genes: 336
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 221 (65.77%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F046750	Metagenome	150	Y
F048690	Metagenome	147	Y
F051592	Metagenome	143	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079403	Metagenome	115	Y
F080709	Metagenome / Metatranscriptome	114	Y
F081952	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000086129	F079403	N/A	MGPQNRHDGKHPDAMIKDFRALLDNTQDATHCVAIYSSTRKFIKHNSCNKTYISDEQLHTIELCIYHGTKIQVEGLDGERISQMCRCTGSQCWRRGDRRNDWVWVKQCPGRCYGALNGRLPWQLQRLFKIKLQNEDGAFVEYWIALALTTIPENSGNLDPVSKFVQVRNAPAAVALQVFSVGNIVGCAHVIPEIATSSKTGDGRNVRWIVNSHIDLATWNDVYN
Ga0307514_10000086140	F010438	GGAG	MWNRRPFMSTRDLEIVSYATRRVAKALAEGPHWQIIETYWNTAMQQNNIWSIAFEARTKEIL
Ga0307514_10000086141	F006048	AGGAG	MLNQQPTLDITHSNRYQVRAQVDKVKSHFIQSASDNIVELYDFHWFESAAEHLEFIDYLLADNKYLFPIAERVEGGVLGSIPTQRESKAANEWLASTSLHGGSNPAVYLHQILSSGE
Ga0307514_10000086148	F063295	GGAGG	VLNGRLLWQLQQLFKIKLLNEDGAFVEYWLALALRTIPENPGKLNPVSKFVQVRNAPAAIALQVFTVGNIVDCAHVIPEIATSSKIGDRRNERWIVNSHIDLATWSDVYN
Ga0307514_10000086162	F010438	GGAG	MWNRWPCISASDLEMVSYAKRRAAKALAEAPHWQIIETYWNTAMQQNNIWSRAFEVRSKEILKEVC
Ga0307514_10000086163	F006048	AGGAG	MLNQWPTVDITRSNQYQVCAQVNKVKSHFIQSATDNIAELYDFHCFESAAERLEFIDSLLADNKYLVPVAEHVEGGVRSPNPTQRESKADNEWLASTSLPGGSNPTVYLHQILSSGESPRQVC
Ga0307514_10000086164	F046750	GGA	MINDKDSHIPSPLIMFTCTALRHALLEWQKNKGVHPKASKSKLKADRPDRSNYFNHKNDGGKITSCCPVRGRKLLTSPGIADTYTFLMNIWNTLPESYQQRVYNNTLATVKRQIQQVENPTPAVVSSVNAAHVDNGILLDHLASDMALEEPEIRSTDPNIPIDNNCKDDKLHFGMPGGSGDYEDDGDECDDRDAIPTASWQRRPATELEMFDLGTSHVNG
Ga0307514_10000086170	F051592	GAG	VRLHEVKNPFLEVVKHANLHCMEEVGLREVAHNTGNVSKHVESSVNMVRREFSIGCRGVGIAEHSI
Ga0307514_10000086172	F079403	N/A	MRPQNRRDGKHPDTMIKDFRALLDNTQDATHRAAIYRDTWEFIKHKSRNKTYISDEQLHAMEFCIYHGIKVQVEGLEGERTSQMCRCTGSQSWRGGNRWNDCVRVKQRPGRCYGALNWCLPWQLQPLLKVKLQNEDGAYVEYWLALALTTIPENTGNLDPVSQFVQVRKAPAAIALLVFSVGNIVSGERIIREIATSSKTVDGQNERWIVNSHIDLATWNDVYS
Ga0307514_10000086179	F080709	N/A	MVQLSTRKREIGEDGGNHHEKLGLVRISYASQLTIPETACTSPDPEGNNTDTRSSKPNQASSKPNQASRTPNFS
Ga0307514_10000086268	F081952	N/A	MVNAPKKNFLPIPAGRYGKSTKRSTQQLHQANEGKSGLEAERVRALGALRSLRSKKKLVVER
Ga0307514_10000086295	F048690	GAG	MLQDMDNMEASCVFYVKVSTFTHLEQSKTSLLTASKSGIVRLTVQHHLIVNVSFMYYPGDPLRQTSANVLSLEQWPIYI
Ga0307514_10000086308	F004891	GGTGG	MIAWASGLGMGVGRFSRWVRGVGVLAMPDAELDTTRHIQSVCEVPIGAGVLQLLVPSVAVGVIIDHHGIVDGVEVTQ
Ga0307514_10000086309	F010438	GGAG	MWNRRPFMSASDLETVSYVIRRVAKALAEAPHWQLIETYWNTTMQQNNIWSIAFEARTKEILKEVY
Ga0307514_10000086310	F046750	N/A	VNNRGKYADGFYNSMIDDKDSHIPSPLTTSTCTALCHTLLEWEKNKGVHPKACKSKLKAERPDHSNYFNYKNDSGKNASYCAATGRKLLTSPGIADTYTFLMNTWNTLPESYQQRVYKNFLATVKHPIQQAENPMPAVVISVKAARVDNFILLDYLTSKVALEEPEIGITDPNIPIDNDCMDDKLYFRIAGGIGDYKDKGCESDQRDTIPTTSWRQPAATELERFDLGTSDVDWYEGADGDHADVDEEEEASQADDGSMQNMDN
Ga0307514_10000086318	F048690	GAG	MLQDMDNMEASCVFYVKVGKFTHLEQSKTSLLTVNKPETVRLTVQHDFSVSVSFMYYPGDSLRQTSTVI