Scaffold Ga0307514_10000083

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000083
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 257121
• Total Scaffold Genes: 275
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 120 (43.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F079540	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000083102	F079540	GAG	MPPPLLERAIFRLGITTSTSFARSSCLQSVQKNRIILTQDASADFGISHLAQLFYTXIEDNWXHDVTGLVLRYDLNVLIDSIFIYLQNGLLYYYHPFHCPTCVEHLGHDYKVEYTNANQGIMPKSHNIWVQYRDSNLDNTFQGLVSSFPGLYFNWTPPNQILQFQEHLPGRMMISTCSKRCKNTQQWILRPQPQEYAVVIPTKYKDPHGWADCIDWFIWVIKKTDKVHNIPVGAIVGAAHLVQDNNAALDRINNVWLVYNNLDFDISXTLY
Ga0307514_10000083103	F079540	N/A	MCRSIKLTSLRDALVDFRIPNFGQLFRTQIEDNWRHEVSGLVLGYDQNVLIDSVFIKLQNGLLYYRQPFHCPTSVERLGLDCKVEYMDANQGIIPESHNIWVQYTDSDLDNTFQSRVPSFPVFYFSWTPPIQILHFQEGLPAGKSKSTFSKRCKKTQQWILCPQPQEYAVVIPTKYKDPHSWADLVDTFIWVVKQTDKMHIVPVGAIVGPAHLVGENNAASDRINSVWLVNYHVDLNTYWTVY
Ga0307514_1000008317	F006048	GAG	MNQLPTVDITCSNQYQVRPQVNKVKSRFIQSARHNIAEHYDLHRFEFAAERLELTDSLLADNKYLFPVAEHLEGGVRGPNPLQRDSEADNEWLASTLLPGGTNPAVYLRQILSSGELPQ
Ga0307514_1000008318	F010438	N/A	MTHLAFATGRLMELYMWNRRPFMSPSNLEMASYATRRVAKAFAEAPHWQIIETYWNTAMQQNNMWSIAFKACTKEIFKEV
Ga0307514_10000083245	F006048	GGA	MVDITRSKRHQLCAQVDKVKSHFIESARDNIGELYDLNRFESAAERLEFIDSLLADNEYCFPVAERVEGSVCGPNPTQRESKADNKXLASTLLLGGSNPAVYLHQILSSGE
Ga0307514_1000008393	F079540	GAG	MHVHGVCRSIKLTSLRDASEDFGIPNFGQLFRMQIEEDWGHEVGGLVLGYDQNVLLDSIGIKLQTGRLYYRQPVYNPTSLERLVLDCKVEYTNANQGIMPEAYNIWVQYTQSEENALGNTFEGRIPSFPVLYFCWTPPNQILQFQQRLPAGKALSIISKRCQTTQQWVLRPQAQEYKVVMSTKYNDLHDWVDCVDRFIRIVKQTNRLHIVPFGAIVGPAQLVRQNAASGGIDSVWLVNNYVDLDTYWTVY