Scaffold Ga0307514_10000079

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000079
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 260903
• Total Scaffold Genes: 299
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (63.88%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F038958	Metagenome	164	Y
F047400	Metagenome	149	Y
F048690	Metagenome	147	Y
F060560	Metagenome	132	Y
F081952	Metagenome / Metatranscriptome	113	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000079101	F006048	AGGAG	MLNQRPTLDITGSNWYQVCAHVGKVKSHFIQSARDNIAELYDLHRFESAAERLEFIDSLLADNKYLFPIAEHVDGSVRGPNPTQRESKAANESPVSTLLPGGSNPVVYLHQILSLGE
Ga0307514_10000079102	F010438	GGA	MSASDLQTVSYATRRVAKALAEAPHWQIIETYWNTAMQQNNIWSIAFEACTQEIFKEVC
Ga0307514_10000079103	F004891	GGA	MISRASGLGMGVGRFSRPLRGVGVLAMPDAGLDTTRRVESVCKVPPGAGVLRLLVTGVAVGVFIDRRSVADGVEATR
Ga0307514_10000079135	F038958	N/A	MTHAIANLFVDVHPSKAKLTLFGDGNCFLIASTVSVDSLRKILLRVLADGNTNSLHNVLYDRRSSRFDIAFHGICAETKPNMRYRFQVSW
Ga0307514_10000079185	F004891	GGA	MIARASGFGIGVGRFSRSLRGVGVLAMPDAGLDTTHRVESVCIVPLGACVFRLLVPGIAVGVIIARRCVVDGVEATP
Ga0307514_10000079186	F010438	N/A	MVSVSRSIHRFGHSDMMRLVFATGTLLEFYMWNRRLFMSASDLEMESYATRRVAKAFAEAPHWQIMETYWNTAMQQNNIWSIPFEARTKEILKEVC
Ga0307514_10000079187	F006048	N/A	MVDITRSKRYQVRAQFDKVKSHFIQSVSDNIAELYDLHRFESAAEHLEFIDSFLAENSYPFPVAEHVAGGVRGPNPTQRESKADNAWLGSTLLPGRGNPAVYLHQILSSGE
Ga0307514_10000079188	F060560	GGA	MINDKDGHIPSPLIMFTCTALRHALLEWEKNKGVHPKASKSKLKANRPDRSNYFNHKNDGGKIASCCAVTGRKLLTSPGVAHTYTFLMNTWNTLPESYQQRVYNNPLATVKRQIQQAENPTPAVVISGEAAGVDNIILLDYLVSEVAFEEPEIGRTDPNIPIDNNCTDD
Ga0307514_10000079201	F010438	N/A	MVSGSRSIHRFGHSDMTRLVFAMGRLLELYRWIRRPFMSASDMETVSYATLRVSKASAETPHWQIIETYWNTAMQQNIIWSIAFEARTKEILKEVS
Ga0307514_1000007933	F004891	GGA	MIARASGFGMGVGRFSRPLRGVGVQAMPDAGLDRRRRVESVCVIPLGAGVFRLLVPGVAVGVIIDHLSVADGVEVTL
Ga0307514_1000007934	F047400	AGGAG	MAQRVAGKHDQWCGYMTVLVVNHGIRKSISILTAVIRPMIKFDVDKLLDCICPEVQWMLAIR
Ga0307514_1000007936	F081959	GGA	MSTGMRARMATMRIRRKKHRKPMMDQRRMWSTEGIVLESGNIRQYISDM
Ga0307514_100000796	F081952	N/A	MVNAPKKNFTPLPAGRYGKSRKCSTQRRHKVNEGKSGLVAERIRALGGLRSLRSKKKLAAEKRRETHFLSNEEKEKWIEDYVERETAGARK
Ga0307514_100000797	F048690	GAG	MLHVMDNMEVSCVFYVKVSTFTHLEQSKIGLLTVNKSGIMTLIVKHDMIVSISFMLYPGDYLRQTSADIRSLELHPINI
Ga0307514_100000798	F008227	N/A	MDTEPPLPGESGSNTGRLAGATTNTDILGTQQDHRHKLVHRDAADAATNHVTQDAHLKIVRKTGSRRNKKQHAVGWEYIHINVISGQLTV