Scaffold Ga0307514_10000076

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000076
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 263584
• Total Scaffold Genes: 297
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 176 (59.26%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008531	Metagenome	332	Y
F026456	Metagenome	197	Y
F046111	Metagenome / Metatranscriptome	151	Y
F078047	Metagenome / Metatranscriptome	116	Y
F079413	Metagenome / Metatranscriptome	115	Y
F092994	Metagenome / Metatranscriptome	106	Y
F102183	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_1000007613	F026456	N/A	MFNHMDGVMRALAKKKTQWKEDLFFAVKLARQKLSIYYAKVTPTMGMLLISAHILDPFRKLGSFRKWDKGMVINPEDETSYTTQYQEAFLK
Ga0307514_1000007614	F004778	N/A	VLDRFELTDGHLLGIMTDNASLNYSMTHELQSTLEASGIEWPALSNHIPCMAHVIQLALGAFMSSFGVKGHTKSWEAHERNQQFGENESIDIGKSQRLQKEGNASINKVLAMKPGLAKVIEKVRIS
Ga0307514_10000076195	F102183	GAG	MKKPKISLPMSLVFAEEKCSRALLDFLFLTDVGRISRVVEEAENSDHEESSDGGV
Ga0307514_1000007622	F046111	AGGA	MDVSSLEHVVIRAKLGDIIGFQIIQIAEQKASFQLTIIALAIEILPTYRDLKRYTSGLGICTVGIL
Ga0307514_10000076237	F079413	GGAG	LDLHSKTGLWIQVKELLFDDAYLYKVVENKKLWFTRIEVLDLIYHQFFFTANSLGRQPTTFQYFQPLAPQTLALVAAAIHCVLSEYASGKKATVMFSQDEF
Ga0307514_10000076255	F008531	N/A	MAHVIQLALGAFMSSLGVKGRTKSWEAHERNQQFGENESTDIGKSQRLRKEGNARINKVPAMKPGLAKIIEKVRI
Ga0307514_10000076269	F092994	N/A	MDLSARRGRISAEERAKRFADGRCLYCGGYNHRAVECAERKKAQTFKAAGAEVEEVGTREGSEELGKD
Ga0307514_100000767	F078047	GAGG	MHWLDGCSRIRVVGAYFSGTLEGGQMGDNLEFFGEVLGLFLVFCLLYYYIIHIHA