Scaffold Ga0307514_10000073

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000073
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 264966
• Total Scaffold Genes: 338
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 217 (64.20%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F019765	Metagenome	227	Y
F042672	Metagenome	157	Y
F046750	Metagenome	150	Y
F048690	Metagenome	147	Y
F060560	Metagenome	132	Y
F062316	Metagenome	130	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079403	Metagenome	115	Y
F079413	Metagenome / Metatranscriptome	115	Y
F081959	Metagenome	113	Y
F092994	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000073123	F060560	GGA	MINDKDSHIPSPLIMFTCTVLRHALLEWQKNKGVHPKASKSKLKADRSYRSNYFNHKNDDGNIASCCAVTGRKLLTSPGVADTYTFLMNTWNTLPVIYQQRVYNNTLASVMHQIQQAENPTPAMVISVEAARVDNAILLDYLASEVVLQEREI
Ga0307514_10000073124	F006048	AGGAG	MLNQRPTVDITRSNRYQVHTQVNKVKSHFIQSARDTIAELYDLHRIESAAECLEFIDSLVADNKNLFPVAEPVEGGVCGPKPTQRESKANNEWLASTVLAGGSNPTVYLHRVLLSGESPR
Ga0307514_10000073147	F004891	GGA	MIARVSGLGMRVGRFSKPLRGVGVLAMPDAGLDTTRRVESVCVIPLGAGVLRLLVPDVAVGVIIDRRCVADGVEVTR
Ga0307514_10000073148	F006048	AGGAG	MLKQRPILDIRCTNRYQVCVQVDQVISHFIQSARDNIAEVYDLHRFESAAEHLEFIDSLLADNKYLFHIAERVEGGVHGPNPTQRESIAANERLASTILPGGSNP
Ga0307514_10000073149	F060560	N/A	MIDDKDGHIPSPLIMFTCTVLRHALLEWQKNKGVHLKASKSKLKADRPDHSNNFNCKNVGRQIISCCTVTGRKLVTSPGIADTYTFMMNTWNTLPESYQQRGYNNTLATVKRQIQQAENPTPAVVISMEAAPVDNAILLDYLTSEVALEEPEIASTDPNIPIDNNCTDHELHFGMPGGSGDFENEGDESDAIPTASR
Ga0307514_10000073151	F081959	GGA	MSTGMRARMAMMWMRRKKHRKPMTEQRRMWRTEGIVLESVKIGQYISNM
Ga0307514_10000073184	F079413	N/A	LDLGSETQLQIQVKELLFDDAYLSKVIKDKKAWFTQMEVLDLIYHQFFFTANRMGRQPTTSQFFQPLTPLTLALVAAVIRCAQSEYATGKKVTVRFSQDEYQGKFCPSMLIDSMTAEASALITITHGGAAS
Ga0307514_10000073191	F019765	GAG	MLQVMDNMEASCIFYVKVGTFTHFEQRKILLMTVNKTGSVKLTIQYDLIVSVSFM
Ga0307514_10000073204	F008531	N/A	MAHVNQLALGAFMRSLGVNSFSKTWEAHECNKQFGEHDSIDIGNCAGLQKEGNARTNKVSAMRSGLAEIIEKVCRLRYFEILTPTII
Ga0307514_10000073219	F010438	GGAG	MSNRWPFMSASDLEMVSYAMRRAAKALAEAPHWQIIETYWNTAMQQNNIWSIAFEACTKQILNEVCCSNGPR
Ga0307514_10000073220	F046750	GAG	VVYAVQIQCRESRKLLTNGQCPLYFLAQAIPGFNYIKFYHRGNNRGKYADGFYNSMIDDKDRHIPSPLIMFTCSALCHAVLEWQTNKVVHPKASKSKLKVDRPDRSNYFNYKNDGGKNASCCTVTGRKLLTSPGLADTYTFLMNTWNTLPESYQQKVYKDTLATVKRQIKQEENPTLAEVISTEVAHVDNANLPNYLTSKVALDEPEIRSTDPNIPIDNNCADYEMHFGMPGGCEDYDNEVDEIDENDAIPTASR
Ga0307514_10000073222	F081959	GGA	MSTGMRARMSTMRMRRKNHHRPTMDQCRMWKNEGIVLESVKFGQYMSDL
Ga0307514_10000073243	F063295	N/A	MCRSTESQSCRGGNRQNDWVWVNKRPGRYYGAMNGWLPWQLEQLFKIKLQNEDGAFLLYWLSLALTTIPENSGNLDPVSKFVQVRKALAAIAFKVFSMGNIIGCAHIVPEIATSSKTGDRQNERWILNSHIDLVTWNDVYN
Ga0307514_10000073256	F062316	N/A	MHLYDSNCTSRTNWFDLAGTPCLVFEPEPLNAFESIEAILTASFEEEPLKAYFWEQSAVPSPWNTYWTDAAKEGGGLDINDPVFGPHWTRYTGAHSWFPCDPEELCDCEGHNCAGTHSTIGHASAAATTAKSLGIPLIVVVPPTPTPSELDAYNWHW
Ga0307514_10000073259	F092994	GGA	MDLSAGKRRILAEERAKRFADGRCLYCGGFNHRAAECAARKKTQTFKASGAEVKEVGTKESSEESGKD
Ga0307514_10000073266	F081959	GAGG	MSMGMMARMARMRMRMKKHCKPTMDQCRMWSTEGIVLESVKIGQYISDM
Ga0307514_10000073269	F006048	N/A	MHKGALARGMLKKRPALHITRSNWYQVRSQVDKVKFHLIQSARDNIPELYDLHHFESAAEHLEFIDSLLADNKYLFSVAKRVEGGVHGPNLMQRELKADNKWLASTVLPGRSNPAVYLHQILSSGE
Ga0307514_10000073270	F010438	N/A	MMRLVFATGRLLQLYMWNRWPFMSASELEKGSYAMGRIAKAFAEAPHWQIIETYWNTAMQQNNIWSIAFEACTKELLPEVC
Ga0307514_10000073271	F004891	GGAG	MIARASGLGMGVGRFSRPLGRVGVLPMPHAGQDTTRRVESVGKVLPAAGVLQLCVPGVAVGVFIDCRSVADGVEVTR
Ga0307514_10000073293	F081959	GGA	MSTGMRGRMATMRMRRKKHRKPMMDQRRMWRTEGIVLESGKIGQYI
Ga0307514_10000073296	F006048	AGGAG	MLKQWPTLDIIRSNWYLVRAQVDKVKSHFIQSARDNIAELYDLDRFESTAERLEFIDSLLADNKYLFPIAERVEGGVRGPNPMQRESKAANEWLASTLLPCGTNPAV
Ga0307514_10000073305	F079403	N/A	MGLQNRRDGKHSDAMIKDFRALLDNTQDATHRAAIYSGMQEFIKHKSHNKTYISDEQLHAMELCIYLGIKVQVEGLQGEHISQMCRCTGSQSWHGRDRRNDCVWVKQRLGRCYGALNGNLLWQLQQVFKIKLQNEDGAFVGYWLALVLTTIPESLGSLDPVSKFVHVRRPPAAVALQVFSVGNIVGCGHIIPEKATSSKTGDGQNE
Ga0307514_1000007347	F004778	N/A	VLNRFELTDGRLLGIMADNASSNYLMTRELQSTLQTSGIEWAALRNHIPCMAHIIQLALGAFMSSLGVKGRITSWEAPERDQQFGENESTDIRKSQRHRKEGNARINKVSAMRTGLSKIIEKVRIS
Ga0307514_1000007353	F048690	GAG	MLQDMDNMEASCVFYVKVSTFTHLEQSETSLLTVIKSGIVRLTIQHDLIVSISFMYYPRDSLRQTSANVFTLKLWPIYS
Ga0307514_1000007365	F042672	N/A	VVIPTKYKYLHGWADCVGWSIQVVKKTNKMHIVPVGAIVGPAQLVRENAASGGMDSIWLVNGHVHLNTYSTVY