Scaffold Ga0307514_10000072

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000072
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 268516
• Total Scaffold Genes: 306
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 193 (63.07%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F051592	Metagenome	143	Y
F059517	Metagenome	133	Y
F062316	Metagenome	130	Y
F063295	Metagenome / Metatranscriptome	129	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000072149	F006048	N/A	MLDMTYSIRYQVRAEVNKVKSHFIQSPRDLIAELYDLHCFESDVEYLEFIDSLLPDNKYLFPLAERVKGGVHGQNQTQRVSKTANECPASTLLPGGSNPGIYLDQILSSGV
Ga0307514_10000072151	F062316	N/A	MQKYDSNCTSRKNWFDLAGTSCLVVERERLNAFESIKAILAATFEEEPLEAYCWEQSTVPSPWNTYLTDAAREGGGLDINDPVFGPHWTQYSGAHSWFPCDPEELCECEGHNCVRTQSTIGHTATAATTAKSLGIPLIVVVPSTLTPSELDTYHWHR
Ga0307514_10000072190	F004891	N/A	MIVLASVSEMGVGKFSRPQRAVGVLEMPDAGQDTTQHVESVCEVPPSARVLRLNVPGVAVRAFIDHRSVADGVATIH
Ga0307514_10000072194	F063295	GGA	VWVKQHPGRCYGALNGRLPWQLQRPFIIKILNEDGAFVEYWLGPVLTTIPENSGNLDPLSKFVPARKILTAVAWQVFSMGNIVGCAHIIPEIATSSKTGEGRNEQWIVTSHIDLVTGNDVYNL
Ga0307514_10000072223	F059517	N/A	MHKENLESGMLKQQPTLVITHSNRYQVRAQVANIISHFIQSARDNLAELCDLHRFESDAECLEFLDSLLADNRYLFPVQERVEDGVHSPNPTQRVSKTANE
Ga0307514_10000072226	F081959	GAGG	VMSTGMSARMVTMRMRMRRNKHRKPMMDQRRMWRTDGIVLESVKIELYISDL
Ga0307514_10000072232	F051592	GAG	MHLHEVENPLLEVVNHADRHCMEEVGLREVTYTTGNMSKQVESLVNMVRREFCIGFLGVGIA