Scaffold Ga0307514_10000069

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000069
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 277323
• Total Scaffold Genes: 360
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 224 (62.22%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F010438	Metagenome	303	Y
F019765	Metagenome	227	Y
F036505	Metagenome	169	Y
F042672	Metagenome	157	Y
F047400	Metagenome	149	Y
F079413	Metagenome / Metatranscriptome	115	Y
F081959	Metagenome	113	Y
F086388	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000069147	F036505	AGG	MSSLGVKDYTKSWKAHERDQQFEENERIDTARIKILRKEGNARINIVSALRPGLAKIIGKVHISTYFECPETEHQIGENACCINYAATCSSK
Ga0307514_10000069167	F086388	AGG	MKNGDKTTVRLEMTAVKEGNNTYVADDIHWHVSQIDCHCQWHFVNHYPRILNCCHGAVARKIGHPVEPYLLSSVEILLLTCSANKDGGKLL
Ga0307514_10000069206	F019765	GAG	MLQVMDNMEASCVVYVKVGTFTHLEQSKISLLTIKKSGMETLTVRYDMIVCVIFM
Ga0307514_10000069211	F047400	AGGAG	MAQYSAGEHHQRRGYMTVRVVNHGIIESIGICTAVIRTMIKFDADKPQDFFRQNVQWMLAIH
Ga0307514_10000069212	F004891	GGA	MIALASGFGMGVGRFSRPLRGVGVLGMPYSALDTTRYVESLCEVLPGAGGLRLIVPSVVAVEVHIDHRCVADGVEAIG
Ga0307514_10000069219	F081959	GAGG	VMSMGMSARIATMWMRMRRNKHRKPMMDQRRMWRTEGIVLESVMIGLYISDL
Ga0307514_10000069223	F047400	GGA	MNPFVLLPLQESMAQHGTGKHDQWRGYMTVLVVNHGIIKSISILTAVIHPMIKFNVDKPRDCFRQEVKWTLAIR
Ga0307514_10000069224	F006048	AGGAG	MLKQRPKLDIRCSNQYHVHAQVDKVKSHFIQSARDNIAELYDLHCFESDAERSEFIDSLLADNKYLFPVAEHVEGGVCSLNSTQRVSKAANEWPASTLLPGGSNPAVYLH
Ga0307514_10000069225	F010438	GGAG	MWIRRPFMSASNLEMVSCETRRVAKALAEAPHWQIIETYWNTTMQQNNIWSIAFEARTKEILKEVC
Ga0307514_10000069252	F042672	N/A	VAVISTKYKDLHIWTDCIDGFIRVVKQTDKIHILPVRAIVGPAHLVLENNAASDRIDSVWLVNNHVDLNTYWTVDYSYNIRIKVCRR
Ga0307514_10000069272	F079413	N/A	LDVGCETAHQIKVEKLLFDDAYLSKVVDNKKSWFTRMEVLDLFRHRFIFTTNSFGYQPTTSQYFRPLAPQTLALTATAIHCALSEYASGE