Scaffold Ga0307514_10000066

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000066
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 282135
• Total Scaffold Genes: 321
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 223 (69.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F010438	Metagenome	303	Y
F046111	Metagenome / Metatranscriptome	151	Y
F060560	Metagenome	132	Y
F079414	Metagenome	115	Y
F079540	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000066160	F046111	N/A	VIRAKLGDIIGFQIIQIAAQKASFQLTIIALAIEIVPTYRNLERYTSGLGTYTVGIL
Ga0307514_10000066164	F046111	AGGA	MEVSSLEHIVIRAKLGDIIGFQIMQIAEQKASFQLTIIALAIEIVPTYKDLERYTSGLGTYTVGIL
Ga0307514_1000006618	F079540	N/A	MRETHVCGVCRSITLSSFRDASEDFGIPNFGQPFRGQIEEDRGHEGSGLVLGYDQNLLLDSILITLQNVLLYYRQPFHNPTSVEHLVLDCQVEYTNDNQGIMPEAHNVWVQYMQSEENGLDNTCEGRIPCFPVLYFSWTPPYQILQFQDCLTAEKAISTFAKRCKITPHWVFHPQAEYYAVVIPTKYKDLHGWADCVNGFIRVVKQANKMHIVPIGAIGGPAHLVRENAALGGMDSVWLVNNHVDLETYWTVYEFRLECPIQVYSCEIDYRI
Ga0307514_10000066212	F079414	GGCGG	MDLYQSSLPAVFAAIPVLYTIAESPLERLLGSLLESLLESLLESLLESLLESVLERASRREE
Ga0307514_1000006642	F004778	N/A	MLEIASCYTSSHYSMTREQQSTLQDFGMKWPTLWNHNPCMAHVIQLGIGAIMSSLGVKGNTKPWEAHHRDQQFGENESIYIGKSQRLQKEGNGRINTVSAMRSGLAKIIEKVRNSTYFESPEADPQTADNG
Ga0307514_1000006672	F010438	GGA	MTRLLFATGRLLELYMWNRWPFMSASDLETVSYARQRLSKAVAEAPHWQIIETYWNTVMQQTNIWSIAFEASTMEILKDVF
Ga0307514_1000006673	F060560	AGGA	MINDKDSDLPSPKIMFTCTTLCHALLKWQQNKGVHLETSQPKLESDRLDRSNYFNYKNDGCKNASCCSATGCQWLTLPGVADQYIFLMNTWNTLLESYQQWVYKNTLATVKSQIQLVENPTPAMVISVEAECVDNAILLNYLTSKVVLEEPEIASTDPNIPIDNNCMDDEVHFVMPVGCAYDEDGGGRNIASG