Scaffold Ga0307514_10000054

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000054
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 305964
• Total Scaffold Genes: 307
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (40.39%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008531	Metagenome	332	Y
F026456	Metagenome	197	Y
F046750	Metagenome	150	Y
F047400	Metagenome	149	Y
F079414	Metagenome	115	Y
F079540	Metagenome	115	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000054171	F046750	N/A	VEAIPWFIYIKYYHWANIRGKYADGFYNSMIDDKDCHIPWPLIMFACTALRHALLEWQKNKGVHPKASKSKLKVDRPDCSNYFNYKNDGGKYASCRTATGLKLLTSPSVADSYNVLINTWNTLPESFQQRVYNNTLATVKHQIQQAENPTPAVVISMEAARVDNAILLDYLTSEVALLDPVIPSTDPNNPINNNCMNDELHLGIQGRSGDSEDARDKRNVRNTIPTDCRQ
Ga0307514_10000054213	F047400	GGA	MNTFVPLPLQELMGQRSASKNDQWRGYMTVLVVNDGIIKSISILTAVIRPMMKLDVDKPCNCFRQEVKWMLAIC
Ga0307514_10000054217	F079540	N/A	MFRSIKLSSLSDAWEDLRIPNFGQRFCAQIEEDWGPKVCGLVLGYNQNVLIESTFIKLHHGLLYYSQPFHIPTSVESLGFDCKIEYTNANQGIMVESHNIXVQYTESDVDNTFQGRVSSFPVSYFSWTPLNQIHPVQEHLLAGITILRFSERCKKIHQCILRPQPQEHVVVIPSKYNDLYGWADCVDRFIWVVKQTYMIHIVPVRAIVGWAHLVRENAAFDRIDRVWLVNNQVDLDIYRTVY
Ga0307514_10000054272	F088003	AGG	MVCEIEHHDGVRSGIVMDKFPHKHPREWTKQALITLQEAMEAYMVVVIAIS
Ga0307514_10000054275	F008531	GAGG	MSSIGVKGRTKSWEAQERDQQCGKNESIDIGKNQRLRKEGNARINKVSAIRCGLAKIIEKVCIS
Ga0307514_10000054277	F026456	N/A	MDSMMRAFAKKKTQXMKDLFFTVKLAGQKLSKYYAEVTPMTGMLLSSAHILNPFRKLRLFGKWDKGMDINSVDETP
Ga0307514_1000005491	F079414	N/A	MCAWAYGTIYSWWLEMDLYQSSLPAVFAAILVLYTIAESLLESLLEILLENLLQSLFENLFESLLESLRGRASHRVE