Scaffold Ga0307514_10000053

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000053
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 307315
• Total Scaffold Genes: 357
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 250 (70.03%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F010438	Metagenome	303	Y
F019765	Metagenome	227	Y
F038958	Metagenome	164	Y
F046111	Metagenome / Metatranscriptome	151	Y
F081959	Metagenome	113	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000053118	F046111	N/A	MDVSSLEHVMISAKLGDIIGFQIIQIAVQKASFQLTIIALAIELVPTYRDFERYTSWLGT
Ga0307514_1000005326	F008531	AGGA	VVHVIQLALGPFLSSLSVKGRTRSWEAHERDQQFGENEGIDIGKSQRLRKEGNARINKVSAMRPGLAKIIEKVRIL
Ga0307514_1000005327	F038958	N/A	MTDVMASLFVDVYPSKGKLTLFHNGNCFLIASTVSAYSLWQMLLRVVADGRTRLSRNALHIRCSTRFDIVFHGICAETNPNMR
Ga0307514_1000005331	F019765	GAG	MLQVMDNMEASCVFYVKVGTFTHLEQSKISLLAVNKSEIVMLNVQHAMIIRVIFM
Ga0307514_1000005332	F008227	N/A	MDTQPPPPGESESNTGRLVGATSNTEILGAQQEHRHKLVHRDAANTATKHMTQDAHLKIVRKTGTSKNKKQHAVGCEYIQIEANGGQLTV
Ga0307514_1000005333	F088003	GGA	LTKAFVRKVREIEHLDVVSSGIFADEFRVKHPREWTKQALIMIEEAMEAYMVEITAEFHC
Ga0307514_1000005337	F046111	GAG	MDVSSLEHVVIRAKLGDIIGFQIIQIAAQKASFQLTIIALAIEIVPTYRDLERYTSGLGTCTVGTL
Ga0307514_1000005392	F081959	GAGG	VMLTGMSAMIWMRMRRNKHRKLMMDQRRMWRTEGIVLESVKIGQYISDM
Ga0307514_1000005395	F006048	AGGAG	MLKQRPMLDITRSNRYQVRAQVNKVKFHFIQSARDNIAELDDLHRFESAAEHLKFIHSLLADNKYLFLVGERVEGGVRGPNPTQRESKAANKWPASTLLHGRSNPAV
Ga0307514_1000005396	F010438	GGAG	MWNRWPFMSASDLETVSYATRHVSNELAEAPHWQIIETYWNTAMQQNNIWSKAFEAHTKEILKEVC
Ga0307514_1000005397	F004891	GGAG	MITWASGLGMGVGRFSRPLRGVGVIAMPNAGLDTMRRGEVPLGAGVLRLLVTGMAVGVFIDRRCAADRVEVTH