Scaffold Ga0307514_10000045

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000045
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 341397
• Total Scaffold Genes: 397
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 253 (63.73%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F008531	Metagenome	332	Y
F019765	Metagenome	227	Y
F042672	Metagenome	157	Y
F051592	Metagenome	143	Y
F079540	Metagenome	115	Y
F088003	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000045128	F079540	GAG	MSVECTEVSNEPHSRDASEDFGIPNFGQLFRAEIKEDWGHEVSGLVLGFDRNVLIDSLFINLHNRPLYYRQPFYCSTSVEHLGLHWNVEYTNANQGIMPESHNIWVQYMQSEENDLDNTFQARIPSFPVLYFSWTALNQILQFQESLPAGKAILMFSKRSKMTEQWVLCPQVQEYAVVIPTKFKALHGWADCVDGCICVVKQMNSMHIVTVGAIVQLAHLVQDKAAAGVIDSVWLLNNHIEFDIYWTVY
Ga0307514_10000045151	F019765	GAG	MLQHMDNMEASCIFYVKVSMFSHLEQSKTSLLTVSESGIVRLTVQHDLIVSVGFM
Ga0307514_10000045220	F042672	N/A	VVPTKYKDPHGWADCVHRFIRIVKQTDMIHVVPVGAIVEPVHLVRENAASDRIDSVWLVNNHVDLDTYWTVYYVTMPESRCAGGG
Ga0307514_10000045256	F004778	AGG	VEEVLGRFELAEGCLLGITTDNASSNDSMTWELQSTLEASGIKWPDLGTHIPCMAQVIELSLGAFMSSLRGKGRTKSWEAHECDQQFGENESTDIRKRQTLRKKGNARMNKVSAMKPGLAKIIQKVCI
Ga0307514_10000045341	F008531	AGGA	MAHIVQLALGAIISSLGVKRCTQHWEANEYNQIFGENKSIDIGNSQKLRPQGNARINKVSAMTSDVAKIIEQVCISR
Ga0307514_10000045351	F088003	GAG	LIAARNGKPPWSTNSFIHTVCKIVYHDVISSGIFAEQFREKHPWVLTKQALKTLEKAMELYMVEVKAEYSF
Ga0307514_1000004551	F008531	N/A	MEHVIPFALGVFISSVGVKDGTKSWEAHERDQQFGENDSTNIGKSLRLRKEGNARINKVSAMWPGLAKIIEKVHISRHCE
Ga0307514_1000004583	F051592	GAG	MALHEVENPLLEVIKYADLHCMEEVRLWEVTHHSGNMSKHIESSVVMTRRQFGVSVLGAGITE
Ga0307514_1000004591	F004891	AGG	VIEVGRILRSLCGVGVVAMANAGLDTTHLVESVCELPLGAGVLQLHVMGVAVEVYIVRRCVAERVKMTH