Scaffold Ga0307514_10000044

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000044
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 341953
• Total Scaffold Genes: 394
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 244 (61.93%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F004891	Metagenome / Metatranscriptome	419	Y
F006048	Metagenome	382	Y
F079403	Metagenome	115	Y
F079414	Metagenome	115	Y
F081959	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000044200	F079414	N/A	MDLYQSSLPPVFAAIPVLYTIAESPLESMLESLLESLLESLLESLLESLFESLLESILERASHREE
Ga0307514_10000044355	F004891	GGAG	MIVRASGSGMRVGRFSRPLRGVGVIAMPDLGLDTTRRIEVSLGAGVLRLLVPGVAVGVFINCCCVADGVEVTC
Ga0307514_10000044361	F081959	GGAGG	MLTGMRASMAMMWMRMRRNKHRKPMMDQRRMWRTEGIVLESVKIGLYILDL
Ga0307514_10000044363	F006048	AGGAG	MLKQRPTLDITRSNRYQVRAQVDKVKSHFIQSARDNIAELYDLHRFESAAEHLEFIDSLLADNKYLFPIAEHVEGGVRGPNPTQREAKATNEWLASTLLHGGRNPAVNLHQIVSSGE
Ga0307514_10000044364	F004891	GGA	MIARASGLGMGVGRFSRPLRGVGVLAMPDAELDTTRRVESLCVIPLGAGVLQLLVPSVAVGVIIDSHCVADGVEVTR
Ga0307514_10000044374	F079403	N/A	MRPQNRRDGKHPDATIKDFRALLDNTQDATHRAAIYSGMWEFIKHKSRNRTYISDEQLHAMELCFYHGIKVQVEGLEGERISQMCRCTGSQSWHRGDRQNDWVWVKQRPGRCYSALNGHLPWQLQRLFKIKLQNKDGAFVEYWLALALTTIPENSGKLNPVSKFVQVKKAPAAVALEVFSVGNIVGCAHMIPEIATSSQTGDGRN
Ga0307514_1000004481	F004778	N/A	VLDRFDLTDGRLLGITTDNALSDYSMTRELQSTLEASGIKWPALRNHIPCMAYVLQLALGTFMSSIGVKGRTKSSEAHERDQQFGENESIDIGKSQRLRKEGNATINKVSAMKPGLAKIIEKVRIS