Scaffold Ga0307514_10000043

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000043
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 343236
• Total Scaffold Genes: 358
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 135 (37.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F019765	Metagenome	227	Y
F079413	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000043105	F079413	N/A	LCSEIELQIQGKQLLFNNAYLSNVGDDKESWFTGMEVLDPIYDKCFLTANSLGRQPTTSQYFEPLTPQTLALAATAIHCVPSEYAIRRKATVMCSQDENGGTFCPSPVINITPDATALINYTKWAG
Ga0307514_1000004322	F008227	N/A	MDIQPPPPGESRSNTGRLACASSNTDILGTQQEPRHKLVDRDAANAATKYMTQDAHLKIVRKTGSRKNQKQHAVGCECIRIEAIGGQLDV
Ga0307514_10000043266	F008227	N/A	MDTQPLPPGESGSNTGRFAGATSNTDILGTQQELRHNLVHRDAANAATKHMSQDVHLKIIRKTGCRKNMQQHAVGCECINIEAIGGQLTV
Ga0307514_10000043295	F008227	N/A	MDTQPPPPGESGSNTWRLAGATSNTAILGTQQVRRHKLLHRDATNAATKHMTHNAHYEIVHKNGSSSNQKQHAVGCEYIHIEVNGGQLTV
Ga0307514_10000043296	F019765	GAG	MLLVMDNMEASCIFYVKVGMFAHLEQSKISLLTVNKSGIVTLTVEHDMIVSVILM