Scaffold Ga0307514_10000041

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000041
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 345587
• Total Scaffold Genes: 360
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 143 (39.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F008227	Metagenome	336	Y
F010438	Metagenome	303	Y
F026456	Metagenome	197	Y
F038958	Metagenome	164	Y
F063295	Metagenome / Metatranscriptome	129	Y
F088003	Metagenome / Metatranscriptome	109	Y
F089625	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000041132	F063295	N/A	MCGCTASQSCRGGNRWNDWVWVKQRPERCYGALNGRLPWQLQRLFKIKLQNEDGACVEYSLALALTTIPGNSGKFDPVSKLVQVRKPLEAVALQVFSVGNIVGCAQLIPEIANSSKTGDGRNERWIVNSHRDLATWNDLYN
Ga0307514_10000041140	F010438	N/A	MTRLVFAMGRLLELYMWNRRPFMSGRDLDTVSYATRRVLKALAEAPHWKIIETYWNTAMQENNIWSLEFEVRTKEILKEVC
Ga0307514_10000041141	F006048	AGGAG	MLKQCPTLDITRSNRYQVRTQVDKVKSHYIQSARDNIAELYDLHRFESVAEHLDFIDSLLADNKYLFPVAECVEGGVRSPNPTQRESKAANKWPASTLLPVRSNPAVYLHQILSSGE
Ga0307514_10000041171	F038958	N/A	MTDVVASLFVDVHLSKGKLTLFVDRNCFLIASTVSVYSLHQMLHSVLVDGSTNSLCNALYDRRISRFDIDCHGIGSETNTIIR
Ga0307514_10000041175	F063295	AGG	MLNGRHPWQLQRLFKIKLQNEDGAFVEYWIALAVTRIPENSGNLDPVSKFVQVRRALAAVALQVFSVGNIVSCAHIIPEIATGSKTGDGQNERWIVNSHIDLVTWNDVYN
Ga0307514_10000041205	F088003	N/A	MAFVRTVCEIEHHYVVSLGIVADESPDKHPREWTKQAVISSEEATQAYMVEVTAEFHC
Ga0307514_10000041206	F008227	N/A	MDTQLPPAGESGSNTGRLAGAISNTEILCAQQERRHKLVHCDAANAATKHMTQDACLTLIRKTGSSTNKKQHAVGCEYIHIEANSSHLTV
Ga0307514_10000041213	F089625	N/A	MPLGSATGPSLNQAERQPVKSNQDENTYQWQQMLNGQYIKMSINGASTICGLVSTVIHQ
Ga0307514_1000004185	F026456	GAGG	VHDDITVYNDMFDHMDGMMRAFAKKKTQWKEDLFFAVKLAQQKLYKYYTEVTPTTGMRLISAHILDPFRKLQTCRKWDKGMDINPEDETSYTTQ