NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307514_10000037

Scaffold Ga0307514_10000037


Overview

Basic Information
Taxon OID3300031649 Open in IMG/M
Scaffold IDGa0307514_10000037 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)353786
Total Scaffold Genes412 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)256 (62.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6253Long. (o)-120.532Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F006048Metagenome382Y
F008227Metagenome336Y
F038018Metagenome / Metatranscriptome166Y
F046111Metagenome / Metatranscriptome151Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307514_10000037222F038018GGAGGVSQTREHLFRHCSRWNDQQKTLWKTVGQATGWKASTCRHVQISELFTIEECDKAVMDFLAATEVGKFPPK
Ga0307514_10000037280F092994AGAAGGVEEKAKRFADGRCLYCGGFNHRAAEYAARKKPKTFKAAGSEVKEVVTKEGSEELGKD
Ga0307514_10000037382F008227N/AMDTQLLPPGDSESNTGRLAGATSNPDILGTQLECRHKIVHDNAANAVTKHLTQDAHLKIVRNTGSRKNTKQHAVGCECIRIEAICGQLTV
Ga0307514_10000037393F004778N/AVLDHFDITEGCLLAITTDNASSNYSMTLELQSTHETSGIAWPALRNHIPCMAHVIQLASGAFMSSLSLKDRTKSLEAHQCDQQFGDNESIDVGKRQRLRTEGNDRINKVSAMKPVSVKRIEKVRIS
Ga0307514_1000003776F046111N/AMDVSSLEHVVIRAKLGDIIGFQIIQVAAQKASFQLAIIALAIEIVPTYRDLERYTSGLGTCTVGTL
Ga0307514_1000003789F006048AGGAGMLKRRPTLDITRSIWYQVQAQVDKVKSHFIQSARHHIAELYDLHRFESDAERLEFIDFLLADNKYLFPVAERVEGGVRGPNPMQRVSKAANEWPASTVLPGGSNPGIYLHQILSSGE
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